mm9_v1_chr10_+_69487700_69487703	31.1709	HOX{A4,D4}.p2	AK033919|Ank3|11735|ankyrin 3, epithelial	AK036171|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr5_-_122906470_122906515	28.1902	HOX{A4,D4}.p2	AK081191|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chrX_+_133357268_133357438	24.3428	HOX{A4,D4}.p2	AK160872|Plp1|18823|proteolipid protein (myelin) 1	AK134554|Plp1|18823|proteolipid protein (myelin) 1	M15442|Plp1|18823|proteolipid protein (myelin) 1	AK077564|Plp1|18823|proteolipid protein (myelin) 1	BC027010|Plp1|18823|proteolipid protein (myelin) 1	NM_011123|Plp1|18823|proteolipid protein (myelin) 1	AK192772|Plp1|18823|proteolipid protein (myelin) 1	AK203421|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr17_+_71168939_71168940	23.7953	HOX{A4,D4}.p2	AK034215|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr11_+_56825307_56825536	21.6769	HOX{A4,D4}.p2	AK049958|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	BC056397|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	AB102773|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	AB102774|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	BC060702|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr16_+_7069971_7070091	21.5949	HOX{A4,D4}.p2	AY659956|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AY659957|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	AY659958|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr11_+_56825258_56825293	21.2427	HOX{A4,D4}.p2	X57497|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr5_-_122907002_122907003	20.8881	HOX{A4,D4}.p2	AK134659|Atp2a2|11938|ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
mm9_v1_chr7_-_107810868_107810907	20.0269	HOX{A4,D4}.p2	BC024756|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AF000272|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	AF101053|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_001163182|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1	NM_013746|Plekhb1|27276|pleckstrin homology domain containing, family B (evectins) member 1
mm9_v1_chr12_+_110784600_110784655	19.8772	HOX{A4,D4}.p2	AK032021|Meg3|17263|maternally expressed 3	AK141629|Meg3|17263|maternally expressed 3
mm9_v1_chr11_+_56825192_56825257	19.7662	HOX{A4,D4}.p2	NM_001113325|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)	NM_008165|Gria1|14799|glutamate receptor, ionotropic, AMPA1 (alpha 1)
mm9_v1_chr16_+_7069927_7069947	19.5804	HOX{A4,D4}.p2	AF191501|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1	NM_183188|Rbfox1|268859|RNA binding protein, fox-1 homolog (C. elegans) 1
mm9_v1_chr12_+_91570569_91570694	19.1045	HOX{A4,D4}.p2	AJ006804|Nrxn3|18191|neurexin III
mm9_v1_chr12_+_30219769_30219800	18.6052	HOX{A4,D4}.p2	AK036205|Myt1l|17933|myelin transcription factor 1-like	NM_001093776|Myt1l|17933|myelin transcription factor 1-like	BC079651|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr2_+_177910053_177910084	18.4506	HOX{A4,D4}.p2	AJ632221|Phactr3|74189|phosphatase and actin regulator 3	NM_001177791|Phactr3|74189|phosphatase and actin regulator 3	AK005136|Phactr3|74189|phosphatase and actin regulator 3
mm9_v1_chr4_+_101180625_101180708	17.8823	HOX{A4,D4}.p2	AK147570|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK147637|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr10_+_69488049_69488073	17.8569	HOX{A4,D4}.p2	AK013684|Ank3|11735|ankyrin 3, epithelial
mm9_v1_chr9_-_91255831_91255857	17.5515	HOX{A4,D4}.p2	AK141431|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr5_+_89012596_89012599	17.4202	HOX{A4,D4}.p2	BC049127|Rufy3|52822|RUN and FYVE domain containing 3	NM_027530|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr13_+_42775991_42775991	17.2233	HOX{A4,D4}.p2	NM_198419|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr12_+_30213224_30213265	16.6175	HOX{A4,D4}.p2	AK012660|Myt1l|17933|myelin transcription factor 1-like	AK139366|Myt1l|17933|myelin transcription factor 1-like	NM_001093775|Myt1l|17933|myelin transcription factor 1-like	NM_001093778|Myt1l|17933|myelin transcription factor 1-like	NM_008666|Myt1l|17933|myelin transcription factor 1-like
mm9_v1_chr13_+_46597271_46597443	16.6062	HOX{A4,D4}.p2	AK035556|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)	NM_026056|Cap2|67252|CAP, adenylate cyclase-associated protein, 2 (yeast)
mm9_v1_chr1_-_42724504_42724516	15.4626	HOX{A4,D4}.p2	BC049671|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr14_+_28689289_28689352	15.444	HOX{A4,D4}.p2	AK122265|Erc2|238988|ELKS/RAB6-interacting/CAST family member 2
mm9_v1_chr13_+_58909254_58909275	15.088	HOX{A4,D4}.p2	AK147391|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr13_+_42776161_42776182	14.8855	HOX{A4,D4}.p2	AK047654|Phactr1|218194|phosphatase and actin regulator 1	AY993932|Phactr1|218194|phosphatase and actin regulator 1
mm9_v1_chr7_-_20284370_20284493	14.8328	HOX{A4,D4}.p2	BC083351|Apoe|11816|apolipoprotein E	BC044785|Apoe|11816|apolipoprotein E	AK149568|Apoe|11816|apolipoprotein E	BC028816|Apoe|11816|apolipoprotein E	AK010261|Apoe|11816|apolipoprotein E	AK075843|Apoe|11816|apolipoprotein E	AK131624|Apoe|11816|apolipoprotein E	AK134921|Apoe|11816|apolipoprotein E	AK148747|Apoe|11816|apolipoprotein E	AK149111|Apoe|11816|apolipoprotein E	AK159105|Apoe|11816|apolipoprotein E	AK159517|Apoe|11816|apolipoprotein E	AK150834|Apoe|11816|apolipoprotein E	AK159424|Apoe|11816|apolipoprotein E
mm9_v1_chr10_-_63552994_63553028	14.8157	HOX{A4,D4}.p2	AK036366|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK163753|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035773|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035858|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK035882|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	NM_178678|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK032485|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3	AK036180|Lrrtm3|216028|leucine rich repeat transmembrane neuronal 3
mm9_v1_chr3_+_68376319_68376428	14.4141	HOX{A4,D4}.p2	BC060529|Schip1|30953|schwannomin interacting protein 1	AK021361|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr5_+_89012537_89012542	14.2005	HOX{A4,D4}.p2	AK013185|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr5_+_89012547_89012592	14.1638	HOX{A4,D4}.p2	AK018184|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chr7_-_20284500_20284543	14.0472	HOX{A4,D4}.p2	NM_009696|Apoe|11816|apolipoprotein E
mm9_v1_chr14_-_109313298_109313300	13.9313	HOX{A4,D4}.p2	AK144290|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr2_+_97306600_97306623	13.3031	HOX{A4,D4}.p2	
mm9_v1_chr3_+_67696141_67696177	13.2202	HOX{A4,D4}.p2	AK052136|Iqcj|208426|IQ motif containing J	NM_001113419|Iqcj-schip1|100505386|IQ motif containing J-schwannomin interacting protein 1 read-through transcript	NM_177585|Iqcj|208426|IQ motif containing J	BC107305|Iqcj|208426|IQ motif containing J	BC107306|Iqcj|208426|IQ motif containing J
mm9_v1_chr5_+_90889913_90889929	13.2051	HOX{A4,D4}.p2	NM_009654|Alb|11657|albumin	AK131891|Alb|11657|albumin	AK160487|Alb|11657|albumin	AK010025|Alb|11657|albumin	AK050248|Alb|11657|albumin	AJ011413|Alb|11657|albumin
mm9_v1_chrX_-_35605544_35605615	12.8614	HOX{A4,D4}.p2	BC062956|Fam70a|245386|family with sequence similarity 70, member A	AK077178|Fam70a|245386|family with sequence similarity 70, member A	AK078264|Fam70a|245386|family with sequence similarity 70, member A	AK041985|Fam70a|245386|family with sequence similarity 70, member A	AK045375|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chr3_+_68376289_68376313	12.848	HOX{A4,D4}.p2	NM_013928|Schip1|30953|schwannomin interacting protein 1
mm9_v1_chr5_+_90889937_90889973	12.7004	HOX{A4,D4}.p2	BC024643|Alb|11657|albumin	BC049971|Alb|11657|albumin	AJ457860|Alb|11657|albumin
mm9_v1_chr14_-_109313333_109313374	12.396	HOX{A4,D4}.p2	AK173296|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr14_-_109313447_109313461	12.3586	HOX{A4,D4}.p2	NM_199065|Slitrk1|76965|SLIT and NTRK-like family, member 1
mm9_v1_chr15_+_4325490_4325644	12.2187	HOX{A4,D4}.p2	AK038575|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	NM_177355|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137637|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	BC137639|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3	AK044972|Plcxd3|239318|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm9_v1_chr18_+_61123204_61123218	12.0498	HOX{A4,D4}.p2	NM_009792|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha	X87142|Camk2a|12322|calcium/calmodulin-dependent protein kinase II alpha
mm9_v1_chr18_+_37925233_37925233	11.9682	HOX{A4,D4}.p2	BC056998|Pcdhga12|93724|protocadherin gamma subfamily A, 12	NM_033595|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr16_-_42340613_42340763	11.7255	HOX{A4,D4}.p2	AK031908|Gap43|14432|growth associated protein 43	BC080758|Gap43|14432|growth associated protein 43	BC028288|Gap43|14432|growth associated protein 43	NM_008083|Gap43|14432|growth associated protein 43
mm9_v1_chr18_+_37834003_37834149	11.6926	HOX{A4,D4}.p2	AY013797|Pcdhga3|93711|protocadherin gamma subfamily A, 3
mm9_v1_chr7_+_31092787_31092817	11.5473	HOX{A4,D4}.p2	BC058124|Clip3|76686|CAP-GLY domain containing linker protein 3
mm9_v1_chr2_+_61884596_61884650	11.5443	HOX{A4,D4}.p2	AK043017|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	NM_033552|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AK220501|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	HM149278|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	BC039226|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	AB033759|Slc4a10|94229|solute carrier family 4, sodium bicarbonate cotransporter-like, member 10
mm9_v1_chr13_+_58909236_58909250	11.4795	HOX{A4,D4}.p2	AK028827|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr6_-_13785233_13785235	11.4682	HOX{A4,D4}.p2	AK013598|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chrX_+_155897136_155897153	11.2008	HOX{A4,D4}.p2	AK005554|Mtap7d2|78283|MAP7 domain containing 2	AK030316|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr13_+_58909168_58909217	11.1358	HOX{A4,D4}.p2	NM_001025074|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2	X17647|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr3_+_114783882_114783882	11.1108	HOX{A4,D4}.p2	AF442824|Olfm3|229759|olfactomedin 3	NM_153157|Olfm3|229759|olfactomedin 3
mm9_v1_chr10_-_31410391_31410392	11.0464	HOX{A4,D4}.p2	AK018248|Nkain2|432450|Na+/K+ transporting ATPase interacting 2
mm9_v1_chr8_+_12984287_12984308	10.6962	HOX{A4,D4}.p2	AK147252|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr4_+_101223198_101223198	10.614	HOX{A4,D4}.p2	BC060734|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164583|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr9_-_73781373_73781373	10.5696	HOX{A4,D4}.p2	NM_001081153|Unc13c|208898|unc-13 homolog C (C. elegans)
mm9_v1_chr8_+_12949417_12949485	10.538	HOX{A4,D4}.p2	NM_001159485|Mcf2l|17207|mcf.2 transforming sequence-like	NM_001159486|Mcf2l|17207|mcf.2 transforming sequence-like	AK170186|Mcf2l|17207|mcf.2 transforming sequence-like	AK170558|Mcf2l|17207|mcf.2 transforming sequence-like
mm9_v1_chr18_-_43219062_43219124	10.3476	HOX{A4,D4}.p2	BC026686|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK148956|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	AK013600|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	NM_028392|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr4_-_60594959_60595030	10.3228	HOX{A4,D4}.p2	EU882231|Mup10|100039008|major urinary protein 10	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	M28649|Mup1|17840|major urinary protein 1	NM_001122647|Mup10|100039008|major urinary protein 10
mm9_v1_chr9_-_49607164_49607185	10.1723	HOX{A4,D4}.p2	NM_001081445|Ncam1|17967|neural cell adhesion molecule 1	NM_001113204|Ncam1|17967|neural cell adhesion molecule 1	NM_010875|Ncam1|17967|neural cell adhesion molecule 1
mm9_v1_chr12_+_110783593_110783620	10.0081	HOX{A4,D4}.p2	AK018105|Meg3|17263|maternally expressed 3	AK140201|Meg3|17263|maternally expressed 3
mm9_v1_chr6_-_102414660_102414660	9.97898	HOX{A4,D4}.p2	NM_008779|Cntn3|18488|contactin 3
mm9_v1_chr6_-_92484838_92484854	9.96286	HOX{A4,D4}.p2	AK147576|Prickle2|243548|prickle homolog 2 (Drosophila)	AK147628|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134459|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr2_+_97307652_97307938	9.65006	HOX{A4,D4}.p2	AK032467|Lrrc4c|241568|leucine rich repeat containing 4C	AK032088|Lrrc4c|241568|leucine rich repeat containing 4C	NM_178725|Lrrc4c|241568|leucine rich repeat containing 4C	BC094588|Lrrc4c|241568|leucine rich repeat containing 4C
mm9_v1_chr12_+_90191833_90191842	9.58538	HOX{A4,D4}.p2	NM_172544|Nrxn3|18191|neurexin III	AK032126|Nrxn3|18191|neurexin III
mm9_v1_chr8_-_87461251_87461273	9.30389	HOX{A4,D4}.p2	BC054524|Mast1|56527|microtubule associated serine/threonine kinase 1	NM_019945|Mast1|56527|microtubule associated serine/threonine kinase 1	AK141034|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr3_+_17695743_17695745	9.25883	HOX{A4,D4}.p2	AK046405|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene	AK032443|6430547I21Rik|320521|RIKEN cDNA 6430547I21 gene
mm9_v1_chr5_-_84846256_84846332	9.15562	HOX{A4,D4}.p2	AK089143|Epha5|13839|Eph receptor A5
mm9_v1_chr11_+_98629709_98629729	9.13214	HOX{A4,D4}.p2	
mm9_v1_chr11_+_87394647_87394667	9.12932	HOX{A4,D4}.p2	AB078010|Sept4|18952|septin 4
mm9_v1_chr18_-_32109233_32109289	9.09238	HOX{A4,D4}.p2	BC070439|Gpr17|574402|G protein-coupled receptor 17	NM_001025381|Gpr17|574402|G protein-coupled receptor 17
mm9_v1_chr13_+_58909632_58909641	9.07042	HOX{A4,D4}.p2	AK147441|Ntrk2|18212|neurotrophic tyrosine kinase, receptor, type 2
mm9_v1_chr10_+_126857922_126857922	9.03755	HOX{A4,D4}.p2	AK043545|R3hdm2|71750|R3H domain containing 2	NM_001168293|R3hdm2|71750|R3H domain containing 2	NM_027900|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr4_+_138012860_138012969	9.02551	HOX{A4,D4}.p2	AK021100|Camk2n1|66259|calcium/calmodulin-dependent protein kinase II inhibitor 1
mm9_v1_chr11_+_29607599_29607721	9.01529	HOX{A4,D4}.p2	AB073672|Rtn4|68585|reticulon 4
mm9_v1_chr4_-_60889249_60889317	8.94972	HOX{A4,D4}.p2	BC091775|Mup1|17840|major urinary protein 1	AK013259|Mup19|100189605|major urinary protein 19	NM_001134674|Mup13|100039089|major urinary protein 13
mm9_v1_chr6_+_104443037_104443047	8.9065	HOX{A4,D4}.p2	BC076594|Cntn6|53870|contactin 6	NM_017383|Cntn6|53870|contactin 6
mm9_v1_chr12_+_39506844_39506916	8.89677	HOX{A4,D4}.p2	NM_007960|Etv1|14009|ets variant gene 1	L10426|Etv1|14009|ets variant gene 1	AK144713|Etv1|14009|ets variant gene 1	BC005645|Etv1|14009|ets variant gene 1
mm9_v1_chr2_-_25325248_25325271	8.83113	HOX{A4,D4}.p2	AB006361|Ptgds|19215|prostaglandin D2 synthase (brain)	BC043015|Ptgds|19215|prostaglandin D2 synthase (brain)	AK131859|Ptgds|19215|prostaglandin D2 synthase (brain)	NM_008963|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr3_-_146432922_146432972	8.81641	HOX{A4,D4}.p2	AK139419|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr16_+_96689206_96689212	8.69399	HOX{A4,D4}.p2	BC061164|Pcp4|18546|Purkinje cell protein 4	NM_008791|Pcp4|18546|Purkinje cell protein 4
mm9_v1_chr12_+_110806715_110806837	8.68667	HOX{A4,D4}.p2	AK148955|Meg3|17263|maternally expressed 3
mm9_v1_chr2_-_25325196_25325238	8.60582	HOX{A4,D4}.p2	X89222|Ptgds|19215|prostaglandin D2 synthase (brain)
mm9_v1_chr15_-_8660729_8660806	8.60149	HOX{A4,D4}.p2	BC058711|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	NM_148938|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr19_+_27291897_27291921	8.58125	HOX{A4,D4}.p2	U06670|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr12_+_101447413_101447431	8.48202	HOX{A4,D4}.p2	BC048752|Calm1|12313|calmodulin 1
mm9_v1_chr18_+_37925619_37925770	8.41042	HOX{A4,D4}.p2	BC054528|Pcdhga12|93724|protocadherin gamma subfamily A, 12	U88550|Pcdhga12|93724|protocadherin gamma subfamily A, 12	AY013795|Pcdhga12|93724|protocadherin gamma subfamily A, 12
mm9_v1_chr9_-_83003967_83004006	8.40619	HOX{A4,D4}.p2	
mm9_v1_chr16_+_96689373_96689378	8.19744	HOX{A4,D4}.p2	X17320|Pcp4|18546|Purkinje cell protein 4
mm9_v1_chr12_+_118896501_118896507	8.15775	HOX{A4,D4}.p2	AK083591|Rapgef5|217944|Rap guanine nucleotide exchange factor (GEF) 5
mm9_v1_chr4_-_109960078_109960115	8.1556	HOX{A4,D4}.p2	BC052451|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AF041342|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	AK079088|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	NM_001038698|Elavl4|15572|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm9_v1_chrX_-_40627962_40627962	8.12751	HOX{A4,D4}.p2	AB025410|Odz1|23963|odd Oz/ten-m homolog 1 (Drosophila)	NM_011855|Odz1|23963|odd Oz/ten-m homolog 1 (Drosophila)
mm9_v1_chrX_-_35605626_35605657	8.10541	HOX{A4,D4}.p2	NM_172930|Fam70a|245386|family with sequence similarity 70, member A
mm9_v1_chrX_+_155897056_155897081	8.08164	HOX{A4,D4}.p2	AK019929|Mtap7d2|78283|MAP7 domain containing 2	AK031868|Mtap7d2|78283|MAP7 domain containing 2	AK043342|Mtap7d2|78283|MAP7 domain containing 2
mm9_v1_chr15_-_58614642_58614788	7.97649	HOX{A4,D4}.p2	AK011623|Tmem65|74868|transmembrane protein 65
mm9_v1_chr2_-_77357674_77357722	7.93931	HOX{A4,D4}.p2	AK078551|Zfp385b|241494|zinc finger protein 385B	AK050293|Zfp385b|241494|zinc finger protein 385B	NM_001113400|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr18_-_31476721_31476786	7.9115	HOX{A4,D4}.p2	U71202|Rit2|19762|Ras-like without CAAX 2	AK162953|Rit2|19762|Ras-like without CAAX 2	AK040743|Rit2|19762|Ras-like without CAAX 2	AK041418|Rit2|19762|Ras-like without CAAX 2	BC018267|Rit2|19762|Ras-like without CAAX 2	NM_009065|Rit2|19762|Ras-like without CAAX 2	AK140726|Rit2|19762|Ras-like without CAAX 2
mm9_v1_chr12_+_101447480_101447584	7.87033	HOX{A4,D4}.p2	BC021618|Calm1|12313|calmodulin 1
mm9_v1_chrX_+_10173557_10173565	7.72746	HOX{A4,D4}.p2	
mm9_v1_chr3_-_146444377_146444386	7.674	HOX{A4,D4}.p2	AK150122|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK150134|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164200|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr3_-_117063793_117063793	7.57424	HOX{A4,D4}.p2	AF541279|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK046782|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266266|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AY266267|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	NM_177664|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr1_-_182123596_182123618	7.54796	HOX{A4,D4}.p2	AJ278735|Adck3|67426|aarF domain containing kinase 3	NM_001163290|Adck3|67426|aarF domain containing kinase 3
mm9_v1_chrX_-_100381973_100382006	7.44867	HOX{A4,D4}.p2	X92352|Nap1l2|17954|nucleosome assembly protein 1-like 2	NM_008671|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr18_+_37849488_37849707	7.41025	HOX{A4,D4}.p2	BC054557|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	NM_033575|Pcdhgb2|93700|protocadherin gamma subfamily B, 2	AY013805|Pcdhgb2|93700|protocadherin gamma subfamily B, 2
mm9_v1_chr11_+_87394543_87394570	7.39759	HOX{A4,D4}.p2	AK135143|Sept4|18952|septin 4	BC055101|Sept4|18952|septin 4	BC037673|Sept4|18952|septin 4
mm9_v1_chr8_+_116729508_116729539	7.37398	HOX{A4,D4}.p2	BC056927|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	AK122527|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)	NM_173016|Vat1l|270097|vesicle amine transport protein 1 homolog-like (T. californica)
mm9_v1_chr18_+_37979242_37979328	7.36016	HOX{A4,D4}.p2	BC138677|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464160|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AY013813|Pcdhgc5|93708|protocadherin gamma subfamily C, 5
mm9_v1_chr5_-_121459496_121459582	7.2169	HOX{A4,D4}.p2	BC042585|Rph3a|19894|rabphilin 3A	NM_011286|Rph3a|19894|rabphilin 3A
mm9_v1_chr3_-_80606500_80606592	7.17123	HOX{A4,D4}.p2	BC066193|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	X57498|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	BC048248|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr9_-_112134984_112135004	7.11666	HOX{A4,D4}.p2	NM_001177616|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr4_-_86876328_86876443	7.11191	HOX{A4,D4}.p2	AK038800|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK136058|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	NM_172426|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr5_+_90890764_90890776	7.07389	HOX{A4,D4}.p2	AK050644|Alb|11657|albumin
mm9_v1_chr18_+_37595274_37595294	7.06926	HOX{A4,D4}.p2	NM_053137|Pcdhb12|93883|protocadherin beta 12
mm9_v1_chr14_-_104213981_104213985	7.04468	HOX{A4,D4}.p2	
mm9_v1_chr11_+_87394609_87394632	7.02205	HOX{A4,D4}.p2	NM_011129|Sept4|18952|septin 4	X61452|Sept4|18952|septin 4
mm9_v1_chr15_-_73640331_73640366	6.97639	HOX{A4,D4}.p2	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr10_+_5151833_5151833	6.95041	HOX{A4,D4}.p2	AK041626|Syne1|64009|synaptic nuclear envelope 1	NM_001079686|Syne1|64009|synaptic nuclear envelope 1
mm9_v1_chr9_+_21742717_21742717	6.94841	HOX{A4,D4}.p2	AY438023|BC018242|235044|cDNA sequence BC018242	BC018242|BC018242|235044|cDNA sequence BC018242	NM_144935|BC018242|235044|cDNA sequence BC018242
mm9_v1_chr13_+_20277293_20277293	6.82607	HOX{A4,D4}.p2	AF398883|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)	NM_080288|Elmo1|140580|engulfment and cell motility 1, ced-12 homolog (C. elegans)
mm9_v1_chr1_-_5060365_5060365	6.7986	HOX{A4,D4}.p2	NM_001177795|Rgs20|58175|regulator of G-protein signaling 20
mm9_v1_chr8_-_87461220_87461246	6.74043	HOX{A4,D4}.p2	AF077818|Mast1|56527|microtubule associated serine/threonine kinase 1
mm9_v1_chr16_-_84955488_84955582	6.71636	HOX{A4,D4}.p2	AK190067|App|11820|amyloid beta (A4) precursor protein	AK194558|App|11820|amyloid beta (A4) precursor protein	AK213784|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr10_+_59763520_59763616	6.69496	HOX{A4,D4}.p2	AK191344|Psap|19156|prosaposin
mm9_v1_chr12_-_32398730_32398790	6.63102	HOX{A4,D4}.p2	AK140577|Gpr22|73010|G protein-coupled receptor 22	AK034194|Gpr22|73010|G protein-coupled receptor 22	AK013755|Gpr22|73010|G protein-coupled receptor 22	AK048077|Gpr22|73010|G protein-coupled receptor 22	AK141569|Gpr22|73010|G protein-coupled receptor 22	BC089509|Gpr22|73010|G protein-coupled receptor 22	NM_175191|Gpr22|73010|G protein-coupled receptor 22
mm9_v1_chr12_+_109843975_109843976	6.61961	HOX{A4,D4}.p2	AK134563|Evl|14026|Ena-vasodilator stimulated phosphoprotein	NM_001163395|Evl|14026|Ena-vasodilator stimulated phosphoprotein
mm9_v1_chr19_-_55177562_55177604	6.60841	HOX{A4,D4}.p2	AK047295|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial	AK173202|Gpam|14732|glycerol-3-phosphate acyltransferase, mitochondrial
mm9_v1_chr16_-_84955086_84955166	6.54224	HOX{A4,D4}.p2	AK190928|App|11820|amyloid beta (A4) precursor protein
mm9_v1_chr6_+_77193078_77193105	6.53152	HOX{A4,D4}.p2	AK053364|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr11_-_79317471_79317554	6.50938	HOX{A4,D4}.p2	BC024757|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr18_+_37979199_37979219	6.50897	HOX{A4,D4}.p2	AF464163|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	NM_033583|Pcdhgc5|93708|protocadherin gamma subfamily C, 5	AF464164|Pcdhgb4|93701|protocadherin gamma subfamily B, 4
mm9_v1_chr1_+_34364633_34364780	6.48166	HOX{A4,D4}.p2	AK009079|Dst|13518|dystonin
mm9_v1_chr15_+_91958558_91958558	6.42006	HOX{A4,D4}.p2	NM_007727|Cntn1|12805|contactin 1
mm9_v1_chr14_+_65885454_65885579	6.40772	HOX{A4,D4}.p2	AK164657|Fbxo16|50759|F-box protein 16	AK081947|Fbxo16|50759|F-box protein 16	AF176531|Fbxo16|50759|F-box protein 16	NM_015795|Fbxo16|50759|F-box protein 16	AK043554|Fbxo16|50759|F-box protein 16	BC086690|Fbxo16|50759|F-box protein 16	BC115890|Fbxo16|50759|F-box protein 16
mm9_v1_chr12_+_50484907_50484951	6.36808	HOX{A4,D4}.p2	BC064449|Foxg1|15228|forkhead box G1
mm9_v1_chr19_+_8915018_8915039	6.21341	HOX{A4,D4}.p2	AK004634|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK151606|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK155753|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)	AK170183|Bscl2|14705|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm9_v1_chrX_+_132424640_132424733	6.19673	HOX{A4,D4}.p2	AK214737|Bhlhb9|70237|basic helix-loop-helix domain containing, class B9
mm9_v1_chr2_+_155215225_155215281	6.16169	HOX{A4,D4}.p2	AK079304|Trp53inp2|68728|transformation related protein 53 inducible nuclear protein 2
mm9_v1_chr14_+_66963139_66963219	6.14962	HOX{A4,D4}.p2	BC014707|Stmn4|56471|stathmin-like 4	BC046752|Stmn4|56471|stathmin-like 4	NM_019675|Stmn4|56471|stathmin-like 4
mm9_v1_chr15_-_37389073_37389150	6.07893	HOX{A4,D4}.p2	BC026979|Ncald|52589|neurocalcin delta	AK167313|Ncald|52589|neurocalcin delta	AK034031|Ncald|52589|neurocalcin delta	NM_001170867|Ncald|52589|neurocalcin delta	NM_001170868|Ncald|52589|neurocalcin delta
mm9_v1_chr8_+_115093942_115094124	6.07522	HOX{A4,D4}.p2	BC034628|Cntnap4|170571|contactin associated protein-like 4	NM_130457|Cntnap4|170571|contactin associated protein-like 4	AK142816|Cntnap4|170571|contactin associated protein-like 4	AK081891|Cntnap4|170571|contactin associated protein-like 4	AK053611|Cntnap4|170571|contactin associated protein-like 4	AK042607|Cntnap4|170571|contactin associated protein-like 4	AK173255|Cntnap4|170571|contactin associated protein-like 4	AF333770|Cntnap4|170571|contactin associated protein-like 4
mm9_v1_chr4_+_101180580_101180604	6.04565	HOX{A4,D4}.p2	NM_001164584|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	NM_001164585|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK030374|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6	AK122293|Dnajc6|72685|DnaJ (Hsp40) homolog, subfamily C, member 6
mm9_v1_chr14_-_31304341_31304341	6.00028	HOX{A4,D4}.p2	AJ437292|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit	NM_028981|Cacna1d|12289|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm9_v1_chr18_-_31606908_31607087	5.98133	HOX{A4,D4}.p2	BC052738|Syt4|20983|synaptotagmin IV	BC058208|Syt4|20983|synaptotagmin IV	AK050515|Syt4|20983|synaptotagmin IV	AK220264|Syt4|20983|synaptotagmin IV	AK148681|Syt4|20983|synaptotagmin IV	AK043985|Syt4|20983|synaptotagmin IV	AK083960|Syt4|20983|synaptotagmin IV	AK032106|Syt4|20983|synaptotagmin IV	NM_009308|Syt4|20983|synaptotagmin IV
mm9_v1_chr3_+_136598184_136598389	5.97524	HOX{A4,D4}.p2	AK218972|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK179617|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform	AK145309|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr16_+_96689322_96689354	5.83692	HOX{A4,D4}.p2	
mm9_v1_chr19_+_56798916_56798947	5.7996	HOX{A4,D4}.p2	AK039569|Adrb1|11554|adrenergic receptor, beta 1
mm9_v1_chr6_+_115189004_115189072	5.78654	HOX{A4,D4}.p2	AK029181|Syn2|20965|synapsin II
mm9_v1_chr6_+_77192839_77192971	5.77076	HOX{A4,D4}.p2	BC027803|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr2_-_73498303_73498483	5.75375	HOX{A4,D4}.p2	AB264771|Chn1|108699|chimerin (chimaerin) 1	BC025023|Chn1|108699|chimerin (chimaerin) 1	AK049943|Chn1|108699|chimerin (chimaerin) 1	AK147686|Chn1|108699|chimerin (chimaerin) 1	BC010825|Chn1|108699|chimerin (chimaerin) 1	BC024796|Chn1|108699|chimerin (chimaerin) 1	AK032630|Chn1|108699|chimerin (chimaerin) 1	AK075606|Chn1|108699|chimerin (chimaerin) 1	NM_001166604|Chn1|108699|chimerin (chimaerin) 1	NM_175752|Chn1|108699|chimerin (chimaerin) 1
mm9_v1_chr12_+_110800212_110800261	5.75086	HOX{A4,D4}.p2	AK018142|Meg3|17263|maternally expressed 3
mm9_v1_chr10_+_84218792_84218938	5.71424	HOX{A4,D4}.p2	NM_001024918|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK034131|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AK090309|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY102010|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AY342003|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)	AB086957|Rfx4|71137|regulatory factor X, 4 (influences HLA class II expression)
mm9_v1_chr2_+_59192308_59192366	5.69697	HOX{A4,D4}.p2	AK021168|Pkp4|227937|plakophilin 4
mm9_v1_chr18_-_42900793_42900846	5.67775	HOX{A4,D4}.p2	AF512670|Ppp2r2b|72930|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm9_v1_chr5_-_139606339_139606437	5.67761	HOX{A4,D4}.p2	AK158994|Prkar1b|19085|protein kinase, cAMP dependent regulatory, type I beta
mm9_v1_chr6_+_124948627_124948627	5.62089	HOX{A4,D4}.p2	AK148352|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene	NM_001145926|C530028O21Rik|319352|RIKEN cDNA C530028O21 gene
mm9_v1_chr14_-_55613384_55613462	5.5685	HOX{A4,D4}.p2	AK040973|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	AK147031|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	AK157742|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	AK169198|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	AK169371|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	AY056464|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	NM_080728|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	DQ231556|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	BC158018|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta	BC158070|Myh7|140781|myosin, heavy polypeptide 7, cardiac muscle, beta
mm9_v1_chr7_+_148817700_148817712	5.55817	HOX{A4,D4}.p2	BC049878|Ap2a2|11772|adaptor protein complex AP-2, alpha 2 subunit
mm9_v1_chr2_-_148558110_148558202	5.53689	HOX{A4,D4}.p2	AK078224|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC038362|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	AK083184|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	NM_019632|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta	BC049874|Napb|17957|N-ethylmaleimide sensitive fusion protein attachment protein beta
mm9_v1_chr3_-_19595395_19595395	5.52675	HOX{A4,D4}.p2	NM_205769|Crh|12918|corticotropin releasing hormone
mm9_v1_chr6_+_134932018_134932018	5.522	HOX{A4,D4}.p2	NM_001109914|Apold1|381823|apolipoprotein L domain containing 1
mm9_v1_chrX_+_20265093_20265121	5.49884	HOX{A4,D4}.p2	AK166188|Cdk16|18555|cyclin-dependent kinase 16
mm9_v1_chr7_-_31840647_31840711	5.43038	HOX{A4,D4}.p2	AK002585|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_019503|Fxyd1|56188|FXYD domain-containing ion transport regulator 1	NM_052992|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr10_+_98486068_98486102	5.40921	HOX{A4,D4}.p2	AK136761|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chrX_+_139997806_139997811	5.3607	HOX{A4,D4}.p2	NM_008778|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	BC053403|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr13_+_83803830_83803849	5.35217	HOX{A4,D4}.p2	AK044589|Mef2c|17260|myocyte enhancer factor 2C
mm9_v1_chr14_-_80171003_80171120	5.34797	HOX{A4,D4}.p2	AK140407|Pcdh8|18530|protocadherin 8	AF231125|Pcdh8|18530|protocadherin 8	BC052388|Pcdh8|18530|protocadherin 8	BC053008|Pcdh8|18530|protocadherin 8	AK048638|Pcdh8|18530|protocadherin 8	AK049982|Pcdh8|18530|protocadherin 8	NM_001042726|Pcdh8|18530|protocadherin 8	NM_021543|Pcdh8|18530|protocadherin 8
mm9_v1_chrX_+_133371611_133371673	5.32137	HOX{A4,D4}.p2	AK199492|Plp1|18823|proteolipid protein (myelin) 1
mm9_v1_chr2_-_23904343_23904369	5.26979	HOX{A4,D4}.p2	AB444950|Hnmt|140483|histamine N-methyltransferase	AB444951|Hnmt|140483|histamine N-methyltransferase	AK160131|Hnmt|140483|histamine N-methyltransferase
mm9_v1_chr5_+_137506122_137506164	5.26968	HOX{A4,D4}.p2	NM_001039385|Vgf|381677|VGF nerve growth factor inducible
mm9_v1_chr17_-_43803963_43804162	5.25757	HOX{A4,D4}.p2	AK014394|Slc25a27|74011|solute carrier family 25, member 27	NM_028711|Slc25a27|74011|solute carrier family 25, member 27	BC138993|Slc25a27|74011|solute carrier family 25, member 27	BC138994|Slc25a27|74011|solute carrier family 25, member 27	AB106930|Slc25a27|74011|solute carrier family 25, member 27	AK021314|Slc25a27|74011|solute carrier family 25, member 27	AK043831|Slc25a27|74011|solute carrier family 25, member 27
mm9_v1_chrX_-_100381703_100381961	5.25162	HOX{A4,D4}.p2	BC115708|Nap1l2|17954|nucleosome assembly protein 1-like 2	BC115761|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK051439|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK131621|Nap1l2|17954|nucleosome assembly protein 1-like 2	AK077430|Nap1l2|17954|nucleosome assembly protein 1-like 2
mm9_v1_chr9_-_107571294_107571298	5.11023	HOX{A4,D4}.p2	BC055339|Slc38a3|76257|solute carrier family 38, member 3
mm9_v1_chr4_-_136441982_136442185	5.09953	HOX{A4,D4}.p2	AK153124|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	BC067001|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	AK140712|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	M22531|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	M36293|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	NM_009777|C1qb|12260|complement component 1, q subcomponent, beta polypeptide	AK152764|C1qb|12260|complement component 1, q subcomponent, beta polypeptide
mm9_v1_chr12_+_39510297_39510297	5.09532	HOX{A4,D4}.p2	AK032224|Etv1|14009|ets variant gene 1	NM_001163154|Etv1|14009|ets variant gene 1
mm9_v1_chr8_+_56122680_56122847	5.06647	HOX{A4,D4}.p2	BC023461|Gpm6a|234267|glycoprotein m6a
mm9_v1_chr3_-_84024766_84024812	5.05776	HOX{A4,D4}.p2	BC058668|Trim2|80890|tripartite motif-containing 2	AB043550|Trim2|80890|tripartite motif-containing 2	AK046887|Trim2|80890|tripartite motif-containing 2	AK147395|Trim2|80890|tripartite motif-containing 2	AK039741|Trim2|80890|tripartite motif-containing 2	AK045410|Trim2|80890|tripartite motif-containing 2	AK083057|Trim2|80890|tripartite motif-containing 2	NM_030706|Trim2|80890|tripartite motif-containing 2
mm9_v1_chr12_+_110783786_110783839	5.01237	HOX{A4,D4}.p2	BC048191|Meg3|17263|maternally expressed 3
mm9_v1_chr2_+_20211539_20211581	5.00442	HOX{A4,D4}.p2	NM_001081006|Etl4|208618|enhancer trap locus 4
mm9_v1_chr18_+_37460452_37460636	4.98732	HOX{A4,D4}.p2	AK030570|Pcdhb3|93874|protocadherin beta 3	NM_053128|Pcdhb3|93874|protocadherin beta 3	BC079557|Pcdhb3|93874|protocadherin beta 3	AF326296|Pcdhb3|93874|protocadherin beta 3	AY013785|Pcdhb3|93874|protocadherin beta 3
mm9_v1_chr19_-_7500486_7500496	4.97339	HOX{A4,D4}.p2	
mm9_v1_chr12_-_4344470_4344503	4.96983	HOX{A4,D4}.p2	U64606|Ncoa1|17977|nuclear receptor coactivator 1	BC068177|Ncoa1|17977|nuclear receptor coactivator 1
mm9_v1_chr6_-_92431385_92431385	4.96951	HOX{A4,D4}.p2	AK020123|Prickle2|243548|prickle homolog 2 (Drosophila)	AK032631|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134460|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr19_+_27291507_27291624	4.95953	HOX{A4,D4}.p2	AK044683|Vldlr|22359|very low density lipoprotein receptor	AK076172|Vldlr|22359|very low density lipoprotein receptor	NM_001161420|Vldlr|22359|very low density lipoprotein receptor	NM_013703|Vldlr|22359|very low density lipoprotein receptor
mm9_v1_chr7_-_67285104_67285104	4.93721	HOX{A4,D4}.p2	NM_001082962|Snrpn|20646|small nuclear ribonucleoprotein N
mm9_v1_chr1_-_67085404_67085478	4.92662	HOX{A4,D4}.p2	Y16518|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	BC058560|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190984|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	Y11550|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AK146120|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	AJ294535|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_001190985|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1	NM_021295|Lancl1|14768|LanC (bacterial lantibiotic synthetase component C)-like 1
mm9_v1_chr7_-_31840594_31840627	4.90093	HOX{A4,D4}.p2	AF089734|Fxyd1|56188|FXYD domain-containing ion transport regulator 1
mm9_v1_chr6_+_58783693_58783693	4.87612	HOX{A4,D4}.p2	BC042574|Herc3|73998|hect domain and RLD 3	BC145978|Herc3|73998|hect domain and RLD 3	BC145980|Herc3|73998|hect domain and RLD 3	NM_028705|Herc3|73998|hect domain and RLD 3
mm9_v1_chr5_+_89012600_89012641	4.87252	HOX{A4,D4}.p2	AK045610|Rufy3|52822|RUN and FYVE domain containing 3	AK083242|Rufy3|52822|RUN and FYVE domain containing 3
mm9_v1_chrM_+_12383_12506	4.85226	HOX{A4,D4}.p2	
mm9_v1_chrX_-_161764912_161765057	4.85116	HOX{A4,D4}.p2	BC056342|Glra2|237213|glycine receptor, alpha 2 subunit	BC068987|Glra2|237213|glycine receptor, alpha 2 subunit	NM_183427|Glra2|237213|glycine receptor, alpha 2 subunit	AK135134|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr5_-_115636064_115636129	4.83489	HOX{A4,D4}.p2	AB079604|Cabp1|29867|calcium binding protein 1	AF169152|Cabp1|29867|calcium binding protein 1	AF169153|Cabp1|29867|calcium binding protein 1	NM_013879|Cabp1|29867|calcium binding protein 1
mm9_v1_chr9_-_107571304_107571323	4.79887	HOX{A4,D4}.p2	BC021324|Slc38a3|76257|solute carrier family 38, member 3
mm9_v1_chr1_+_169548381_169548439	4.77077	HOX{A4,D4}.p2	NM_001159731|Rxrg|20183|retinoid X receptor gamma	S62952|Rxrg|20183|retinoid X receptor gamma
mm9_v1_chr9_-_55983967_55984081	4.71503	HOX{A4,D4}.p2	AK212733|Tspan3|56434|tetraspanin 3	AK206202|Tspan3|56434|tetraspanin 3	AK211000|Tspan3|56434|tetraspanin 3	AK216580|Tspan3|56434|tetraspanin 3	AK219763|Tspan3|56434|tetraspanin 3	AK219867|Tspan3|56434|tetraspanin 3	AK206891|Tspan3|56434|tetraspanin 3	AK219936|Tspan3|56434|tetraspanin 3
mm9_v1_chr8_+_114062242_114062242	4.64248	HOX{A4,D4}.p2	NM_001168623|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr9_-_60535274_60535340	4.64055	HOX{A4,D4}.p2	AK051325|Lrrc49|102747|leucine rich repeat containing 49	NM_001146047|Lrrc49|102747|leucine rich repeat containing 49
mm9_v1_chr3_-_80606704_80606756	4.62786	HOX{A4,D4}.p2	AK163941|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK046861|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001039195|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_001083806|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	NM_013540|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK014389|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr5_+_107926763_107926815	4.60799	HOX{A4,D4}.p2	AK043587|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001007574|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK043720|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK164388|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	AK169666|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene	NM_001168557|A830010M20Rik|231570|RIKEN cDNA A830010M20 gene
mm9_v1_chr6_+_8900018_8900018	4.60164	HOX{A4,D4}.p2	BC145953|Nxph1|18231|neurexophilin 1	BC145955|Nxph1|18231|neurexophilin 1	NM_008751|Nxph1|18231|neurexophilin 1
mm9_v1_chr15_+_18750083_18750083	4.57308	HOX{A4,D4}.p2	AK138606|Cdh10|320873|cadherin 10	NM_009865|Cdh10|320873|cadherin 10
mm9_v1_chr6_+_91124214_91124275	4.57127	HOX{A4,D4}.p2	AK209341|Hdac11|232232|histone deacetylase 11
mm9_v1_chr10_+_34018323_34018472	4.54696	HOX{A4,D4}.p2	AK028517|Tspyl4|72480|TSPY-like 4
mm9_v1_chr3_+_84756090_84756352	4.53042	HOX{A4,D4}.p2	AF391192|Fbxw7|50754|F-box and WD-40 domain protein 7	NM_080428|Fbxw7|50754|F-box and WD-40 domain protein 7	AF427101|Fbxw7|50754|F-box and WD-40 domain protein 7	BC131648|Fbxw7|50754|F-box and WD-40 domain protein 7	AB221593|Fbxw7|50754|F-box and WD-40 domain protein 7
mm9_v1_chr6_+_77192615_77192722	4.50376	HOX{A4,D4}.p2	AK080836|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	NM_028880|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK014545|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1	AK053345|Lrrtm1|74342|leucine rich repeat transmembrane neuronal 1
mm9_v1_chr9_+_75159201_75159201	4.439	HOX{A4,D4}.p2	NM_010313|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5	U69145|Gnb5|14697|guanine nucleotide binding protein (G protein), beta 5
mm9_v1_chr13_+_94077988_94077988	4.41704	HOX{A4,D4}.p2	AY137385|Homer1|26556|homer homolog 1 (Drosophila)	NM_152134|Homer1|26556|homer homolog 1 (Drosophila)
mm9_v1_chr9_-_112134930_112134962	4.36598	HOX{A4,D4}.p2	AK032417|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr4_-_60083321_60083368	4.36397	HOX{A4,D4}.p2	NM_001134675|Mup7|100041658|major urinary protein 7
mm9_v1_chr8_-_48373564_48373676	4.34487	HOX{A4,D4}.p2	BC099949|Stox2|71069|storkhead box 2
mm9_v1_chr11_-_98590680_98590748	4.33016	HOX{A4,D4}.p2	AF126543|Med24|23989|mediator complex subunit 24	AK193218|Med24|23989|mediator complex subunit 24	AK020269|Med24|23989|mediator complex subunit 24	AK154618|Med24|23989|mediator complex subunit 24	AK158385|Med24|23989|mediator complex subunit 24	NM_011869|Med24|23989|mediator complex subunit 24
mm9_v1_chr19_+_25107619_25107625	4.32797	HOX{A4,D4}.p2	BC087907|Ndufb4|68194|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm9_v1_chr1_+_111880313_111880391	4.32712	HOX{A4,D4}.p2	AK034096|Cdh7|241201|cadherin 7, type 2	NM_172853|Cdh7|241201|cadherin 7, type 2	AK137369|Cdh7|241201|cadherin 7, type 2
mm9_v1_chrX_-_148776674_148776969	4.26648	HOX{A4,D4}.p2	BC004006|Tspyl2|52808|TSPY-like 2	BC043694|Tspyl2|52808|TSPY-like 2	AY273809|Tspyl2|52808|TSPY-like 2	BC054393|Tspyl2|52808|TSPY-like 2	AK018700|Tspyl2|52808|TSPY-like 2
mm9_v1_chrY_-_623013_623055	4.25855	HOX{A4,D4}.p2	AK154382|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	AJ007376|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	BC051046|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	NM_012008|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr19_-_42160732_42160861	4.24772	HOX{A4,D4}.p2	AK180979|Morn4|226123|MORN repeat containing 4	AK214121|Morn4|226123|MORN repeat containing 4	BC023055|Morn4|226123|MORN repeat containing 4	AK159230|Morn4|226123|MORN repeat containing 4	AK154147|Morn4|226123|MORN repeat containing 4	NM_198108|Morn4|226123|MORN repeat containing 4
mm9_v1_chr2_+_55288297_55288380	4.22807	HOX{A4,D4}.p2	BC068167|Kcnj3|16519|potassium inwardly-rectifying channel, subfamily J, member 3
mm9_v1_chr4_+_86221552_86221613	4.18075	HOX{A4,D4}.p2	NM_178376|Rraga|68441|Ras-related GTP binding A	BC048245|Rraga|68441|Ras-related GTP binding A	AK004955|Rraga|68441|Ras-related GTP binding A
mm9_v1_chr1_-_42751652_42751673	4.15802	HOX{A4,D4}.p2	BC094545|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK011437|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK019154|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene	AK048630|2610017I09Rik|66297|RIKEN cDNA 2610017I09 gene
mm9_v1_chr11_-_73138102_73138139	4.11186	HOX{A4,D4}.p2	BC024934|Aspa|11484|aspartoacylase	AK002859|Aspa|11484|aspartoacylase	AK008354|Aspa|11484|aspartoacylase	NM_023113|Aspa|11484|aspartoacylase
mm9_v1_chr1_-_159342351_159342384	4.09856	HOX{A4,D4}.p2	AK086812|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr15_+_16707855_16707855	4.09801	HOX{A4,D4}.p2	NM_009869|Cdh9|12565|cadherin 9
mm9_v1_chr18_-_35374531_35374610	4.07773	HOX{A4,D4}.p2	AK043173|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046818|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK049920|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK043784|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr6_+_30758582_30758676	4.07007	HOX{A4,D4}.p2	AK014219|Copg2as2|100044236|coatomer protein complex, subunit gamma 2, antisense 2
mm9_v1_chr11_+_29640992_29641009	4.05446	HOX{A4,D4}.p2	AK206171|Rtn4|68585|reticulon 4
mm9_v1_chr6_+_29820210_29820288	4.02138	HOX{A4,D4}.p2	AK122382|Ahcyl2|74340|S-adenosylhomocysteine hydrolase-like 2
mm9_v1_chr12_+_110884340_110884400	4.01887	HOX{A4,D4}.p2	AF498294|Rian|75745|RNA imprinted and accumulated in nucleus	AB063319|Rian|75745|RNA imprinted and accumulated in nucleus	AK017440|Rian|75745|RNA imprinted and accumulated in nucleus
mm9_v1_chrX_+_45976916_45976963	3.95993	HOX{A4,D4}.p2	AK051145|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AK148277|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr4_-_9570742_9570800	3.89829	HOX{A4,D4}.p2	AF302655|Asph|65973|aspartate-beta-hydroxylase	AF302653|Asph|65973|aspartate-beta-hydroxylase	AK009170|Asph|65973|aspartate-beta-hydroxylase	BC128299|Asph|65973|aspartate-beta-hydroxylase	BC152365|Asph|65973|aspartate-beta-hydroxylase	AK028679|Asph|65973|aspartate-beta-hydroxylase	AK017453|Asph|65973|aspartate-beta-hydroxylase	AK014674|Asph|65973|aspartate-beta-hydroxylase	AK030694|Asph|65973|aspartate-beta-hydroxylase	AK009903|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr12_-_81861527_81861701	3.87644	HOX{A4,D4}.p2	AK147473|Gm1568|380768|predicted gene 1568	BC067044|Gm1568|380768|predicted gene 1568	NM_001008423|Gm1568|380768|predicted gene 1568
mm9_v1_chr5_-_69933835_69933870	3.86728	HOX{A4,D4}.p2	AK009405|Yipf7|75581|Yip1 domain family, member 7	BC089576|Yipf7|75581|Yip1 domain family, member 7	NM_023784|Yipf7|75581|Yip1 domain family, member 7
mm9_v1_chr9_-_121404799_121404856	3.84422	HOX{A4,D4}.p2	NM_031161|Cck|12424|cholecystokinin
mm9_v1_chr5_+_116295259_116295312	3.83129	HOX{A4,D4}.p2	AK145037|Cit|12704|citron
mm9_v1_chr10_-_116782524_116782604	3.81525	HOX{A4,D4}.p2	AK086495|Cpsf6|432508|cleavage and polyadenylation specific factor 6
mm9_v1_chr5_+_130263548_130263603	3.81169	HOX{A4,D4}.p2	AK199226|Gbas|14467|glioblastoma amplified sequence
mm9_v1_chr2_-_150658838_150658852	3.80559	HOX{A4,D4}.p2	
mm9_v1_chr6_-_39760868_39760934	3.79582	HOX{A4,D4}.p2	BC028645|Mrps33|14548|mitochondrial ribosomal protein S33	BC087881|Mrps33|14548|mitochondrial ribosomal protein S33	AK019000|Mrps33|14548|mitochondrial ribosomal protein S33	AK144131|Mrps33|14548|mitochondrial ribosomal protein S33	Y17852|Mrps33|14548|mitochondrial ribosomal protein S33	NM_001010930|Mrps33|14548|mitochondrial ribosomal protein S33	NM_010270|Mrps33|14548|mitochondrial ribosomal protein S33
mm9_v1_chr7_-_112748624_112748633	3.75056	HOX{A4,D4}.p2	AK145928|Hpx|15458|hemopexin	NM_017371|Hpx|15458|hemopexin
mm9_v1_chr3_-_80606641_80606686	3.73726	HOX{A4,D4}.p2	AK044574|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK134572|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK086614|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK043490|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)	AK141525|Gria2|14800|glutamate receptor, ionotropic, AMPA2 (alpha 2)
mm9_v1_chr6_-_13788453_13788525	3.72916	HOX{A4,D4}.p2	AK043090|Gpr85|64450|G protein-coupled receptor 85
mm9_v1_chr18_-_60769648_60769761	3.72897	HOX{A4,D4}.p2	AK129267|Synpo|104027|synaptopodin	AK141564|Synpo|104027|synaptopodin	NM_001109975|Synpo|104027|synaptopodin
mm9_v1_chr2_+_22477837_22477846	3.68339	HOX{A4,D4}.p2	D42051|Gad2|14417|glutamic acid decarboxylase 2	NM_008078|Gad2|14417|glutamic acid decarboxylase 2
mm9_v1_chrX_+_166123130_166123181	3.67485	HOX{A4,D4}.p2	AK160120|Mid1|17318|midline 1	NM_010797|Mid1|17318|midline 1	Y14848|Mid1|17318|midline 1
mm9_v1_chr1_-_93829376_93829378	3.6585	HOX{A4,D4}.p2	AK170461|Hdac4|208727|histone deacetylase 4
mm9_v1_chr1_-_174128558_174128619	3.65055	HOX{A4,D4}.p2	BC092079|Pea15a|18611|phosphoprotein enriched in astrocytes 15A
mm9_v1_chr7_-_110962416_110962439	3.64667	HOX{A4,D4}.p2	BC027434|Hbb-b2|15130|hemoglobin, beta adult minor chain	BC032264|Hbb-b2|15130|hemoglobin, beta adult minor chain	NM_016956|Hbb-b2|15130|hemoglobin, beta adult minor chain	AK168412|Hbb-b1|15129|hemoglobin, beta adult major chain	AK002394|Hbb-b1|15129|hemoglobin, beta adult major chain	AK005496|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011033|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011050|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011052|Hbb-b1|15129|hemoglobin, beta adult major chain	AK011057|Hbb-b1|15129|hemoglobin, beta adult major chain	AK012551|Hbb-b1|15129|hemoglobin, beta adult major chain	AK167615|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168477|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168584|Hbb-b1|15129|hemoglobin, beta adult major chain	AK168819|Hbb-b1|15129|hemoglobin, beta adult major chain	AK028067|Hbb-b1|15129|hemoglobin, beta adult major chain	NM_008220|Hbb-b1|15129|hemoglobin, beta adult major chain
mm9_v1_chr4_-_60083171_60083243	3.61047	HOX{A4,D4}.p2	EU882230|Mup7|100041658|major urinary protein 7	BC092254|Mup1|17840|major urinary protein 1	BC091744|Mup1|17840|major urinary protein 1	BC100586|Mup1|17840|major urinary protein 1
mm9_v1_chr11_+_66984528_66984720	3.5724	HOX{A4,D4}.p2	DQ020160|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	NM_001039545|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AK036437|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	AY963799|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020161|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	DQ020162|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult	BC008538|Myh2|17882|myosin, heavy polypeptide 2, skeletal muscle, adult
mm9_v1_chr9_-_121701480_121701624	3.55972	HOX{A4,D4}.p2	BC024464|Hhatl|74770|hedgehog acyltransferase-like	AK003605|Hhatl|74770|hedgehog acyltransferase-like	NM_029095|Hhatl|74770|hedgehog acyltransferase-like
mm9_v1_chr18_-_35374663_35374683	3.53122	HOX{A4,D4}.p2	AK122278|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK036155|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK044705|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	AK046774|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2	NM_178005|Lrrtm2|107065|leucine rich repeat transmembrane neuronal 2
mm9_v1_chr15_-_93426312_93426402	3.53102	HOX{A4,D4}.p2	AK153711|Prickle1|106042|prickle homolog 1 (Drosophila)	NM_001033217|Prickle1|106042|prickle homolog 1 (Drosophila)
mm9_v1_chr11_-_79317583_79317590	3.49828	HOX{A4,D4}.p2	NM_019409|Omg|18377|oligodendrocyte myelin glycoprotein	AK136910|Omg|18377|oligodendrocyte myelin glycoprotein
mm9_v1_chr2_-_65405546_65405588	3.46643	HOX{A4,D4}.p2	AK148881|Scn3a|20269|sodium channel, voltage-gated, type III, alpha	NM_018732|Scn3a|20269|sodium channel, voltage-gated, type III, alpha
mm9_v1_chr1_-_172487240_172487240	3.4642	HOX{A4,D4}.p2	AK138471|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	AK162919|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein	NM_027528|Nos1ap|70729|nitric oxide synthase 1 (neuronal) adaptor protein
mm9_v1_chr4_+_137280366_137280389	3.46031	HOX{A4,D4}.p2	AK005063|Rap1gap|110351|Rap1 GTPase-activating protein
mm9_v1_chr9_-_91260619_91260636	3.40199	HOX{A4,D4}.p2	NM_009573|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr9_-_121404750_121404785	3.37959	HOX{A4,D4}.p2	BC028487|Cck|12424|cholecystokinin	AK002677|Cck|12424|cholecystokinin
mm9_v1_chr14_-_88871202_88871202	3.37483	HOX{A4,D4}.p2	AK083114|Pcdh20|219257|protocadherin 20	NM_178685|Pcdh20|219257|protocadherin 20
mm9_v1_chrX_-_22797942_22797952	3.36149	HOX{A4,D4}.p2	AK013399|Klhl13|67455|kelch-like 13 (Drosophila)
mm9_v1_chr12_+_75398460_75398460	3.33365	HOX{A4,D4}.p2	NM_198866|Dbpht2|386753|DNA binding protein with his-thr domain
mm9_v1_chr6_-_40985505_40985509	3.33274	HOX{A4,D4}.p2	AK007773|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008695|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	AK008460|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	NM_023333|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene	BC061093|2210010C04Rik|67373|RIKEN cDNA 2210010C04 gene
mm9_v1_chr8_-_70498472_70498472	3.31023	HOX{A4,D4}.p2	AB220685|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_177698|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chrX_+_140100287_140100287	3.30075	HOX{A4,D4}.p2	NM_001195049|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	U39738|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr18_-_12914177_12914270	3.29004	HOX{A4,D4}.p2	AK209493|Osbpl1a|64291|oxysterol binding protein-like 1A
mm9_v1_chr9_+_109905895_109906037	3.27092	HOX{A4,D4}.p2	
mm9_v1_chr1_-_82232392_82232507	3.25819	HOX{A4,D4}.p2	AK141842|Irs1|16367|insulin receptor substrate 1
mm9_v1_chr18_+_23910833_23910892	3.25619	HOX{A4,D4}.p2	AK158570|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	NM_001162942|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2	AK168834|Mapre2|212307|microtubule-associated protein, RP/EB family, member 2
mm9_v1_chr18_-_34738725_34738759	3.25533	HOX{A4,D4}.p2	AK006111|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	BC049625|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	AK131722|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)	NM_080637|Nme5|75533|non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)
mm9_v1_chr11_-_73137838_73138062	3.25338	HOX{A4,D4}.p2	AK035910|Aspa|11484|aspartoacylase	AF212998|Aspa|11484|aspartoacylase
mm9_v1_chr2_+_120289326_120289332	3.22743	HOX{A4,D4}.p2	NM_001177799|Capn3|12335|calpain 3	NM_007601|Capn3|12335|calpain 3
mm9_v1_chr19_+_38339167_38339370	3.22138	HOX{A4,D4}.p2	AK045443|Lgi1|56839|leucine-rich repeat LGI family, member 1	BC066090|Lgi1|56839|leucine-rich repeat LGI family, member 1	NM_020278|Lgi1|56839|leucine-rich repeat LGI family, member 1	AF246818|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK035873|Lgi1|56839|leucine-rich repeat LGI family, member 1	AK031996|Lgi1|56839|leucine-rich repeat LGI family, member 1
mm9_v1_chrX_-_161765324_161765332	3.21166	HOX{A4,D4}.p2	AK139335|Glra2|237213|glycine receptor, alpha 2 subunit
mm9_v1_chr9_-_54509453_54509528	3.18832	HOX{A4,D4}.p2	AK129179|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	BC057322|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	AK054103|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr7_-_112748585_112748623	3.18822	HOX{A4,D4}.p2	U89889|Hpx|15458|hemopexin	BC011246|Hpx|15458|hemopexin	BC019901|Hpx|15458|hemopexin
mm9_v1_chr17_-_57226987_57227204	3.17032	HOX{A4,D4}.p2	BC054831|Tubb4|22153|tubulin, beta 4	AK013717|Tubb4|22153|tubulin, beta 4	BC049112|Tubb4|22153|tubulin, beta 4	NM_009451|Tubb4|22153|tubulin, beta 4
mm9_v1_chr16_+_57152994_57153228	3.12391	HOX{A4,D4}.p2	BC025450|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)	AK011763|Tomm70a|28185|translocase of outer mitochondrial membrane 70 homolog A (yeast)
mm9_v1_chr5_+_73882264_73882364	3.11967	HOX{A4,D4}.p2	NM_001190733|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	NM_178896|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	AK033559|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137627|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC137628|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC144794|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC060213|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	BC108346|Dcun1d4|100737|DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
mm9_v1_chr8_-_67071497_67071512	3.11804	HOX{A4,D4}.p2	
mm9_v1_chr5_+_31167731_31167889	3.09799	HOX{A4,D4}.p2	AK210919|Mapre3|100732|microtubule-associated protein, RP/EB family, member 3
mm9_v1_chr9_+_74899844_74899963	3.06986	HOX{A4,D4}.p2	AK078740|Arpp19|59046|cAMP-regulated phosphoprotein 19
mm9_v1_chr13_-_55671276_55671335	3.046	HOX{A4,D4}.p2	AK173303|Fam193b|212483|family with sequence similarity 193, member B	BC025483|Fam193b|212483|family with sequence similarity 193, member B	NM_001162881|Fam193b|212483|family with sequence similarity 193, member B
mm9_v1_chr1_-_137063881_137064000	3.04084	HOX{A4,D4}.p2	BC127619|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC127620|Gpr37l1|171469|G protein-coupled receptor 37-like 1	BC098482|Gpr37l1|171469|G protein-coupled receptor 37-like 1	AB016602|Gpr37l1|171469|G protein-coupled receptor 37-like 1
mm9_v1_chr10_-_122550401_122550537	3.04044	HOX{A4,D4}.p2	AK088952|Usp15|14479|ubiquitin specific peptidase 15
mm9_v1_chr15_+_12082671_12082674	3.03144	HOX{A4,D4}.p2	AK158938|Zfr|22763|zinc finger RNA binding protein
mm9_v1_chr2_+_90725895_90726123	3.01296	HOX{A4,D4}.p2	NM_026161|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC087832|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	AK002948|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4	BC027315|C1qtnf4|67445|C1q and tumor necrosis factor related protein 4
mm9_v1_chr17_-_82137708_82137731	3.00149	HOX{A4,D4}.p2	AF004666|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_001112798|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	NM_011406|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	U70033|Slc8a1|20541|solute carrier family 8 (sodium/calcium exchanger), member 1	AK084813|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene	AK085810|D830013E24Rik|319510|RIKEN cDNA D830013E24 gene
mm9_v1_chr1_+_74331503_74331655	3.00109	HOX{A4,D4}.p2	AF318058|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC116236|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC116237|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_001039509|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	NM_025580|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC008274|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	BC058945|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK012976|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK173125|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK009545|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AY039041|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AY299972|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia	AK166548|Pnkd|56695|paroxysmal nonkinesiogenic dyskinesia
mm9_v1_chr11_+_94189303_94189504	2.99158	HOX{A4,D4}.p2	NM_027799|Ankrd40|71452|ankyrin repeat domain 40	NM_146024|Ankrd40|71452|ankyrin repeat domain 40	BC023133|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr15_-_44584003_44584003	2.94972	HOX{A4,D4}.p2	AB232449|Sybu|319613|syntabulin (syntaxin-interacting)	BC065045|Sybu|319613|syntabulin (syntaxin-interacting)	NM_178765|Sybu|319613|syntabulin (syntaxin-interacting)
mm9_v1_chr10_+_126938744_126938772	2.9444	HOX{A4,D4}.p2	BC067208|Stac3|237611|SH3 and cysteine rich domain 3	AK036516|Stac3|237611|SH3 and cysteine rich domain 3	NM_177707|Stac3|237611|SH3 and cysteine rich domain 3
mm9_v1_chrX_-_148777014_148777028	2.93972	HOX{A4,D4}.p2	NM_029836|Tspyl2|52808|TSPY-like 2
mm9_v1_chr16_-_84831712_84831743	2.90998	HOX{A4,D4}.p2	U77128|Atp5j|11957|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
mm9_v1_chr5_-_121459315_121459358	2.90182	HOX{A4,D4}.p2	D29965|Rph3a|19894|rabphilin 3A	AB112924|Rph3a|19894|rabphilin 3A
mm9_v1_chr11_+_100442602_100442668	2.88848	HOX{A4,D4}.p2	AK190081|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase	AK211066|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr2_-_77541328_77541435	2.88082	HOX{A4,D4}.p2	BC048543|Zfp385b|241494|zinc finger protein 385B	NM_001113399|Zfp385b|241494|zinc finger protein 385B	AK047859|Zfp385b|241494|zinc finger protein 385B
mm9_v1_chr14_-_37911383_37911496	2.87404	HOX{A4,D4}.p2	AF426393|Cdhr1|170677|cadherin-related family member 1	BC042454|Cdhr1|170677|cadherin-related family member 1	AK143151|Cdhr1|170677|cadherin-related family member 1	BC058270|Cdhr1|170677|cadherin-related family member 1	NM_130878|Cdhr1|170677|cadherin-related family member 1
mm9_v1_chr5_+_115685856_115685859	2.76589	HOX{A4,D4}.p2	BC022670|Pop5|117109|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	NM_026398|Pop5|117109|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm9_v1_chr4_-_133928435_133928461	2.73902	HOX{A4,D4}.p2	AK164184|Extl1|56219|exostoses (multiple)-like 1	AK085075|Extl1|56219|exostoses (multiple)-like 1	AK172619|Extl1|56219|exostoses (multiple)-like 1	NM_019578|Extl1|56219|exostoses (multiple)-like 1
mm9_v1_chr11_+_31900378_31900504	2.73801	HOX{A4,D4}.p2	AK088499|Nsg2|18197|neuron specific gene family member 2	NM_008741|Nsg2|18197|neuron specific gene family member 2	U17259|Nsg2|18197|neuron specific gene family member 2	AK049679|Nsg2|18197|neuron specific gene family member 2	AK075612|Nsg2|18197|neuron specific gene family member 2	AK160712|Nsg2|18197|neuron specific gene family member 2	BC018224|Nsg2|18197|neuron specific gene family member 2	AK041338|Nsg2|18197|neuron specific gene family member 2
mm9_v1_chr9_-_30957394_30957461	2.71792	HOX{A4,D4}.p2	
mm9_v1_chr6_+_5340417_5340708	2.70086	HOX{A4,D4}.p2	AK132068|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK018373|Asb4|65255|ankyrin repeat and SOCS box-containing 4	BC054745|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK076004|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AF155355|Asb4|65255|ankyrin repeat and SOCS box-containing 4	AK133894|Asb4|65255|ankyrin repeat and SOCS box-containing 4
mm9_v1_chr2_-_115890747_115890848	2.68874	HOX{A4,D4}.p2	U68383|Meis2|17536|Meis homeobox 2	U68384|Meis2|17536|Meis homeobox 2	AJ000504|Meis2|17536|Meis homeobox 2	AJ000505|Meis2|17536|Meis homeobox 2	AJ000506|Meis2|17536|Meis homeobox 2	AJ000507|Meis2|17536|Meis homeobox 2	AK146633|Meis2|17536|Meis homeobox 2	NM_001136072|Meis2|17536|Meis homeobox 2	NM_001159567|Meis2|17536|Meis homeobox 2	NM_001159568|Meis2|17536|Meis homeobox 2	NM_010825|Meis2|17536|Meis homeobox 2	BC017375|Meis2|17536|Meis homeobox 2
mm9_v1_chr9_-_112088452_112088452	2.67748	HOX{A4,D4}.p2	NM_001177618|Arpp21|74100|cyclic AMP-regulated phosphoprotein, 21
mm9_v1_chr5_+_136293975_136293975	2.66953	HOX{A4,D4}.p2	BC058385|Srrm3|58212|serine/arginine repetitive matrix 3	NM_021403|Srrm3|58212|serine/arginine repetitive matrix 3
mm9_v1_chr17_+_24607348_24607427	2.66614	HOX{A4,D4}.p2	BC083113|Pgp|67078|phosphoglycolate phosphatase	BC040100|Pgp|67078|phosphoglycolate phosphatase	NM_025954|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr5_-_84846348_84846408	2.66182	HOX{A4,D4}.p2	BC057401|Epha5|13839|Eph receptor A5	AK133698|Epha5|13839|Eph receptor A5	AK034289|Epha5|13839|Eph receptor A5	AK049740|Epha5|13839|Eph receptor A5	NM_007937|Epha5|13839|Eph receptor A5
mm9_v1_chr9_+_46721685_46721730	2.65272	HOX{A4,D4}.p2	AK038437|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK049847|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK013669|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	BC054400|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene	AK140089|2900052N01Rik|73040|RIKEN cDNA 2900052N01 gene
mm9_v1_chr2_-_122420914_122421005	2.65095	HOX{A4,D4}.p2	AK167378|Gatm|67092|glycine amidinotransferase (L-arginine:glycine amidinotransferase)
mm9_v1_chr14_-_65035722_65035811	2.64051	HOX{A4,D4}.p2	AK018338|Msra|110265|methionine sulfoxide reductase A
mm9_v1_chr11_-_99184254_99184266	2.63381	HOX{A4,D4}.p2	BC018391|Krt25|70810|keratin 25	NM_133730|Krt25|70810|keratin 25	AK014538|Krt25|70810|keratin 25
mm9_v1_chr11_-_83880574_83880586	2.62351	HOX{A4,D4}.p2	AK009744|Dusp14|56405|dual specificity phosphatase 14
mm9_v1_chr14_-_125076242_125076348	2.61427	HOX{A4,D4}.p2	BC107003|Fgf14|14169|fibroblast growth factor 14	BC107004|Fgf14|14169|fibroblast growth factor 14	AK079100|Fgf14|14169|fibroblast growth factor 14	NM_207667|Fgf14|14169|fibroblast growth factor 14
mm9_v1_chr11_+_67051530_67051557	2.61063	HOX{A4,D4}.p2	NM_010855|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066419|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ233297|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chrX_-_159081510_159081550	2.60577	HOX{A4,D4}.p2	AY263368|Reps2|194590|RALBP1 associated Eps domain containing protein 2	NM_178256|Reps2|194590|RALBP1 associated Eps domain containing protein 2
mm9_v1_chr5_+_149114763_149114791	2.60538	HOX{A4,D4}.p2	AK019985|Mtus2|77521|microtubule associated tumor suppressor candidate 2
mm9_v1_chr3_+_136598485_136598597	2.57846	HOX{A4,D4}.p2	AK053582|Ppp3ca|19055|protein phosphatase 3, catalytic subunit, alpha isoform
mm9_v1_chr9_+_37175190_37175276	2.56612	HOX{A4,D4}.p2	AK013637|Hepacam|72927|hepatocyte cell adhesion molecule	NM_175189|Hepacam|72927|hepatocyte cell adhesion molecule	BC139057|Hepacam|72927|hepatocyte cell adhesion molecule	BC139058|Hepacam|72927|hepatocyte cell adhesion molecule	AK081154|Hepacam|72927|hepatocyte cell adhesion molecule	BC082537|Hepacam|72927|hepatocyte cell adhesion molecule
mm9_v1_chr19_-_37250472_37250552	2.55036	HOX{A4,D4}.p2	AK147243|Cpeb3|208922|cytoplasmic polyadenylation element binding protein 3
mm9_v1_chr3_-_81779636_81779675	2.5499	HOX{A4,D4}.p2	U24493|Tdo2|56720|tryptophan 2,3-dioxygenase	BC018390|Tdo2|56720|tryptophan 2,3-dioxygenase	NM_019911|Tdo2|56720|tryptophan 2,3-dioxygenase	AK132271|Tdo2|56720|tryptophan 2,3-dioxygenase
mm9_v1_chr6_+_113433656_113433876	2.54758	HOX{A4,D4}.p2	BC025932|Creld1|171508|cysteine-rich with EGF-like domains 1	AK186017|Creld1|171508|cysteine-rich with EGF-like domains 1	AK195695|Creld1|171508|cysteine-rich with EGF-like domains 1	AK208544|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr12_-_91976586_91976877	2.54262	HOX{A4,D4}.p2	AK032038|Dio2|13371|deiodinase, iodothyronine, type II	AK045607|Dio2|13371|deiodinase, iodothyronine, type II	AF177196|Dio2|13371|deiodinase, iodothyronine, type II	AF177197|Dio2|13371|deiodinase, iodothyronine, type II	AF093137|Dio2|13371|deiodinase, iodothyronine, type II	BC125383|Dio2|13371|deiodinase, iodothyronine, type II	BC125385|Dio2|13371|deiodinase, iodothyronine, type II	AF096875|Dio2|13371|deiodinase, iodothyronine, type II	NM_010050|Dio2|13371|deiodinase, iodothyronine, type II
mm9_v1_chr6_-_122692754_122692762	2.54147	HOX{A4,D4}.p2	AK140176|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3	NM_011401|Slc2a3|20527|solute carrier family 2 (facilitated glucose transporter), member 3
mm9_v1_chr2_+_138104219_138104260	2.53926	HOX{A4,D4}.p2	AB093275|Btbd3|228662|BTB (POZ) domain containing 3	NM_145534|Btbd3|228662|BTB (POZ) domain containing 3	BC018174|Btbd3|228662|BTB (POZ) domain containing 3
mm9_v1_chr2_+_31804066_31804106	2.53682	HOX{A4,D4}.p2	AK004365|1110064A23Rik|68893|RIKEN cDNA 1110064A23 gene
mm9_v1_chr1_-_136201384_136201419	2.52528	HOX{A4,D4}.p2	AK078263|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	AK170782|Ppfia4|68507|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4
mm9_v1_chr4_-_137869546_137869914	2.5243	HOX{A4,D4}.p2	AK219773|Pink1|68943|PTEN induced putative kinase 1	AK196813|Pink1|68943|PTEN induced putative kinase 1	AK190338|Pink1|68943|PTEN induced putative kinase 1	AK190010|Pink1|68943|PTEN induced putative kinase 1	AK219694|Pink1|68943|PTEN induced putative kinase 1	AK213324|Pink1|68943|PTEN induced putative kinase 1	AK218284|Pink1|68943|PTEN induced putative kinase 1	AK205601|Pink1|68943|PTEN induced putative kinase 1	AK182588|Pink1|68943|PTEN induced putative kinase 1	AK219274|Pink1|68943|PTEN induced putative kinase 1	AK179666|Pink1|68943|PTEN induced putative kinase 1
mm9_v1_chr2_+_158492468_158492468	2.52384	HOX{A4,D4}.p2	NM_153089|Ppp1r16b|228852|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm9_v1_chr18_-_77285981_77286025	2.51746	HOX{A4,D4}.p2	BC056963|Katnal2|71206|katanin p60 subunit A-like 2	AK014074|Katnal2|71206|katanin p60 subunit A-like 2	BC069977|Katnal2|71206|katanin p60 subunit A-like 2
mm9_v1_chr18_+_78012506_78012506	2.51398	HOX{A4,D4}.p2	NM_007505|Atp5a1|11946|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1
mm9_v1_chr7_+_27814096_27814122	2.49797	HOX{A4,D4}.p2	BC018356|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	NM_133657|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	BC094017|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12	L06463|Cyp2a12|13085|cytochrome P450, family 2, subfamily a, polypeptide 12
mm9_v1_chr2_-_79748552_79748555	2.48733	HOX{A4,D4}.p2	AK014810|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AF159298|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AY845863|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AY845864|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001009978|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_001009979|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr5_-_88128419_88128445	2.48656	HOX{A4,D4}.p2	BC019114|Csn2|12991|casein beta	BC013332|Csn2|12991|casein beta	BC092098|Csn2|12991|casein beta	BC020356|Csn2|12991|casein beta	BC050270|Csn2|12991|casein beta	BC020383|Csn2|12991|casein beta	BC021153|Csn2|12991|casein beta	BC057671|Csn2|12991|casein beta	BC080709|Csn2|12991|casein beta	AK164792|Csn2|12991|casein beta	AK164793|Csn2|12991|casein beta	AK085729|Csn2|12991|casein beta	AK021324|Csn2|12991|casein beta	AK021328|Csn2|12991|casein beta	AK052803|Csn2|12991|casein beta	AK052805|Csn2|12991|casein beta	AK052822|Csn2|12991|casein beta	AK085678|Csn2|12991|casein beta	AK085694|Csn2|12991|casein beta	AK085698|Csn2|12991|casein beta	AK085756|Csn2|12991|casein beta	AK142616|Csn2|12991|casein beta	AK142620|Csn2|12991|casein beta	AK142631|Csn2|12991|casein beta	AK142635|Csn2|12991|casein beta	AK164747|Csn2|12991|casein beta	AK164761|Csn2|12991|casein beta	AK164791|Csn2|12991|casein beta	AK164794|Csn2|12991|casein beta	NM_009972|Csn2|12991|casein beta	X04490|Csn2|12991|casein beta
mm9_v1_chr1_-_164796660_164796743	2.48507	HOX{A4,D4}.p2	BC011229|Fmo1|14261|flavin containing monooxygenase 1	NM_010231|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chr7_+_88202481_88202485	2.46547	HOX{A4,D4}.p2	AF338872|Alpk3|116904|alpha-kinase 3	NM_054085|Alpk3|116904|alpha-kinase 3
mm9_v1_chr8_-_55804030_55804031	2.45984	HOX{A4,D4}.p2	NM_028220|Wdr17|244484|WD repeat domain 17	BC028268|Wdr17|244484|WD repeat domain 17
mm9_v1_chr18_+_77365613_77365672	2.45785	HOX{A4,D4}.p2	AK078097|Pias2|17344|protein inhibitor of activated STAT 2
mm9_v1_chr6_-_38075416_38075515	2.43988	HOX{A4,D4}.p2	AK141785|D630045J12Rik|330286|RIKEN cDNA D630045J12 gene
mm9_v1_chr4_-_69587193_69587277	2.43902	HOX{A4,D4}.p2	AK030082|Gm11223|100039888|stathmin 1 pseudogene
mm9_v1_chr1_+_137635977_137636035	2.43381	HOX{A4,D4}.p2	CT010278|Csrp1|13007|cysteine and glycine-rich protein 1
mm9_v1_chr2_+_131763454_131763725	2.43266	HOX{A4,D4}.p2	AK215651|Prnp|19122|prion protein	AK205534|Prnp|19122|prion protein	AK213884|Prnp|19122|prion protein	AK206219|Prnp|19122|prion protein
mm9_v1_chr18_+_38611212_38611226	2.41911	HOX{A4,D4}.p2	
mm9_v1_chr2_-_79969095_79969127	2.4117	HOX{A4,D4}.p2	BC090628|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	AK043647|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent	NM_016744|Pde1a|18573|phosphodiesterase 1A, calmodulin-dependent
mm9_v1_chr2_+_22478062_22478110	2.40902	HOX{A4,D4}.p2	AK141473|Gad2|14417|glutamic acid decarboxylase 2	L16980|Gad2|14417|glutamic acid decarboxylase 2
mm9_v1_chr3_+_116265890_116265995	2.40614	HOX{A4,D4}.p2	AK035072|Lrrc39|109245|leucine rich repeat containing 39	NM_027321|Lrrc39|109245|leucine rich repeat containing 39	NM_175413|Lrrc39|109245|leucine rich repeat containing 39	AK039277|Lrrc39|109245|leucine rich repeat containing 39	AK079125|Lrrc39|109245|leucine rich repeat containing 39	AK008119|Lrrc39|109245|leucine rich repeat containing 39	AK052159|Lrrc39|109245|leucine rich repeat containing 39	BC119529|Lrrc39|109245|leucine rich repeat containing 39	BC119530|Lrrc39|109245|leucine rich repeat containing 39	AK046671|Lrrc39|109245|leucine rich repeat containing 39
mm9_v1_chr5_-_124028994_124029065	2.4017	HOX{A4,D4}.p2	AK003546|Clip1|56430|CAP-GLY domain containing linker protein 1
mm9_v1_chr10_+_126921038_126921212	2.39619	HOX{A4,D4}.p2	BC023826|R3hdm2|71750|R3H domain containing 2
mm9_v1_chr10_-_79371636_79371695	2.39595	HOX{A4,D4}.p2	BC057056|Med16|216154|mediator complex subunit 16	AK042340|Med16|216154|mediator complex subunit 16	AK149345|Med16|216154|mediator complex subunit 16	NM_001163276|Med16|216154|mediator complex subunit 16	NM_198107|Med16|216154|mediator complex subunit 16
mm9_v1_chr13_+_75227306_75227456	2.39497	HOX{A4,D4}.p2	X57088|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	M69196|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	AK043742|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	M58589|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	NM_013628|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	BC108982|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1	BC108983|Pcsk1|18548|proprotein convertase subtilisin/kexin type 1
mm9_v1_chr7_+_129776837_129777102	2.3947	HOX{A4,D4}.p2	BC038148|Prkcb|18751|protein kinase C, beta	BC048553|Prkcb|18751|protein kinase C, beta
mm9_v1_chr11_-_42134548_42134554	2.39396	HOX{A4,D4}.p2	AK135145|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	AK137331|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_001099641|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	NM_008068|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr17_-_90487479_90487653	2.39115	HOX{A4,D4}.p2	AK032032|Nrxn1|18189|neurexin I
mm9_v1_chr4_-_60152702_60152728	2.38114	HOX{A4,D4}.p2	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	NM_001045550|Mup2|17841|major urinary protein 2	NM_008647|Mup2|17841|major urinary protein 2
mm9_v1_chr11_-_21471767_21471820	2.37899	HOX{A4,D4}.p2	AK168545|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002404|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	BC050940|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK008270|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK002395|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	M29462|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK164785|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK077724|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	AK046369|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chr11_+_29618696_29618843	2.36564	HOX{A4,D4}.p2	AF326337|Rtn4|68585|reticulon 4
mm9_v1_chr18_-_31476626_31476690	2.36236	HOX{A4,D4}.p2	AK140133|Rit2|19762|Ras-like without CAAX 2	AK046425|Rit2|19762|Ras-like without CAAX 2	AK139394|Rit2|19762|Ras-like without CAAX 2	AF084463|Rit2|19762|Ras-like without CAAX 2	AK162862|Rit2|19762|Ras-like without CAAX 2
mm9_v1_chr7_-_52894111_52894127	2.35188	HOX{A4,D4}.p2	AK003910|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK049852|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene	AK037147|A030001D20Rik|100126243|RIKEN cDNA A030001D20 gene
mm9_v1_chr6_+_57652448_57652452	2.34375	HOX{A4,D4}.p2	NM_133737|Lancl2|71835|LanC (bacterial lantibiotic synthetase component C)-like 2
mm9_v1_chr18_+_37424591_37424651	2.33755	HOX{A4,D4}.p2	BC132112|Pcdhb1|93872|protocadherin beta 1	BC132296|Pcdhb1|93872|protocadherin beta 1	AY013770|Pcdhb1|93872|protocadherin beta 1	NM_053126|Pcdhb1|93872|protocadherin beta 1
mm9_v1_chr9_-_91260597_91260611	2.33702	HOX{A4,D4}.p2	BC063247|Zic1|22771|zinc finger protein of the cerebellum 1	AK159769|Zic1|22771|zinc finger protein of the cerebellum 1	AK139143|Zic1|22771|zinc finger protein of the cerebellum 1	BC060247|Zic1|22771|zinc finger protein of the cerebellum 1
mm9_v1_chr12_+_37968225_37968446	2.33257	HOX{A4,D4}.p2	AK040702|Tmem195|319660|transmembrane protein 195	NM_178767|Tmem195|319660|transmembrane protein 195	BC038044|Tmem195|319660|transmembrane protein 195	AK050246|Tmem195|319660|transmembrane protein 195	AK163155|Tmem195|319660|transmembrane protein 195
mm9_v1_chr4_-_60675161_60675282	2.32901	HOX{A4,D4}.p2	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC059097|Mup2|17841|major urinary protein 2	BC099597|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M16356|Mup2|17841|major urinary protein 2	M28649|Mup1|17840|major urinary protein 1	BC012259|Mup2|17841|major urinary protein 2	NM_001134644|LOC100048885|100048885|major urinary protein LOC100048885	AK013259|Mup19|100189605|major urinary protein 19	AK013972|Mup11|100039028|major urinary protein 11	NM_001045550|Mup2|17841|major urinary protein 2	NM_008647|Mup2|17841|major urinary protein 2	NM_001164526|Mup11|100039028|major urinary protein 11	M16355|Mup1|17840|major urinary protein 1
mm9_v1_chr11_-_75346554_75346608	2.32662	HOX{A4,D4}.p2	
mm9_v1_chr11_-_109957250_109957250	2.32572	HOX{A4,D4}.p2	NM_153145|Abca8a|217258|ATP-binding cassette, sub-family A (ABC1), member 8a
mm9_v1_chr18_+_37560490_37560542	2.27049	HOX{A4,D4}.p2	AK032626|Pcdhb9|93880|protocadherin beta 9	NM_053134|Pcdhb9|93880|protocadherin beta 9	BC055319|Pcdhb9|93880|protocadherin beta 9	BC062640|Pcdhb9|93880|protocadherin beta 9
mm9_v1_chr18_+_69753146_69753168	2.24804	HOX{A4,D4}.p2	AK151433|Tcf4|21413|transcription factor 4
mm9_v1_chr3_-_80717578_80717587	2.24795	HOX{A4,D4}.p2	AK082578|Glrb|14658|glycine receptor, beta subunit
mm9_v1_chr4_-_61443185_61443257	2.24236	HOX{A4,D4}.p2	EU882232|Mup19|100189605|major urinary protein 19	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	AK013259|Mup19|100189605|major urinary protein 19	NM_001135127|Mup19|100189605|major urinary protein 19
mm9_v1_chr19_+_23240506_23240595	2.22869	HOX{A4,D4}.p2	AK187278|Klf9|16601|Kruppel-like factor 9
mm9_v1_chr19_-_5085487_5085548	2.21846	HOX{A4,D4}.p2	AK144531|Tmem151a|381199|transmembrane protein 151A	AK155690|Tmem151a|381199|transmembrane protein 151A	AK163651|Tmem151a|381199|transmembrane protein 151A	AK139456|Tmem151a|381199|transmembrane protein 151A
mm9_v1_chr1_-_160286359_160286472	2.21739	HOX{A4,D4}.p2	BC067038|Fam5b|240843|family with sequence similarity 5, member B	BC076572|Fam5b|240843|family with sequence similarity 5, member B	NM_207583|Fam5b|240843|family with sequence similarity 5, member B	AK032297|Fam5b|240843|family with sequence similarity 5, member B	AK047824|Fam5b|240843|family with sequence similarity 5, member B	AK122549|Fam5b|240843|family with sequence similarity 5, member B
mm9_v1_chr4_-_60434715_60434862	2.19256	HOX{A4,D4}.p2	EU882232|Mup19|100189605|major urinary protein 19	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC055353|LOC100048884|100048884|novel member of the major urinary protein (Mup) gene family	BC106092|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M16356|Mup2|17841|major urinary protein 2	BC012259|Mup2|17841|major urinary protein 2	NM_001126319|Mup9|100038948|major urinary protein 9
mm9_v1_chr12_+_45412878_45412942	2.17257	HOX{A4,D4}.p2	AK033938|Pnpla8|67452|patatin-like phospholipase domain containing 8
mm9_v1_chr1_+_97230610_97230736	2.16329	HOX{A4,D4}.p2	AK152164|Fam174a|67698|family with sequence similarity 174, member A
mm9_v1_chr9_+_108698323_108698461	2.15882	HOX{A4,D4}.p2	BC039922|Ip6k2|76500|inositol hexaphosphate kinase 2	NM_029634|Ip6k2|76500|inositol hexaphosphate kinase 2	BC060059|Ip6k2|76500|inositol hexaphosphate kinase 2
mm9_v1_chr1_-_16647097_16647129	2.1541	HOX{A4,D4}.p2	BC028545|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1	AK011757|Tceb1|67923|transcription elongation factor B (SIII), polypeptide 1
mm9_v1_chr1_+_42752608_42752622	2.15353	HOX{A4,D4}.p2	
mm9_v1_chr2_-_69180643_69180677	2.15002	HOX{A4,D4}.p2	AF133903|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	AK144553|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11	NM_021022|Abcb11|27413|ATP-binding cassette, sub-family B (MDR/TAP), member 11
mm9_v1_chr11_-_41996141_41996431	2.14947	HOX{A4,D4}.p2	AK141596|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	AK034095|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	NM_010250|Gabra1|14394|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm9_v1_chr6_+_137359231_137359310	2.13812	HOX{A4,D4}.p2	NM_001164402|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	NM_001164403|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37465|Ptpro|19277|protein tyrosine phosphatase, receptor type, O	U37466|Ptpro|19277|protein tyrosine phosphatase, receptor type, O
mm9_v1_chr7_+_25055436_25055599	2.13382	HOX{A4,D4}.p2	AK132229|Zfp93|22755|zinc finger protein 93	NM_009567|Zfp93|22755|zinc finger protein 93	U46186|Zfp93|22755|zinc finger protein 93	AK146095|Zfp93|22755|zinc finger protein 93	AK165630|Zfp93|22755|zinc finger protein 93	AK040325|Zfp93|22755|zinc finger protein 93	AK028905|Zfp93|22755|zinc finger protein 93
mm9_v1_chr2_-_112099427_112099447	2.11885	HOX{A4,D4}.p2	BC125332|BC125332|213765|cDNA sequence BC125332	BC125334|BC125332|213765|cDNA sequence BC125332	AK077049|BC125332|213765|cDNA sequence BC125332	NM_172521|BC125332|213765|cDNA sequence BC125332
mm9_v1_chr9_-_107980133_107980133	2.11866	HOX{A4,D4}.p2	AY744153|Rnf123|84585|ring finger protein 123	NM_032543|Rnf123|84585|ring finger protein 123
mm9_v1_chr6_+_40914752_40914770	2.11425	HOX{A4,D4}.p2	BC132243|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	BC132245|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	AK007406|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene	NM_023707|1810009J06Rik|73626|RIKEN cDNA 1810009J06 gene
mm9_v1_chr7_-_107476113_107476159	2.10453	HOX{A4,D4}.p2	AK218423|Ppme1|72590|protein phosphatase methylesterase 1
mm9_v1_chr1_+_173085648_173085681	2.08565	HOX{A4,D4}.p2	AK157960|Mpz|17528|myelin protein zero	BC139139|Mpz|17528|myelin protein zero	BC141226|Mpz|17528|myelin protein zero
mm9_v1_chr6_+_54402876_54402876	2.08141	HOX{A4,D4}.p2	NM_001167860|Wipf3|330319|WAS/WASL interacting protein family, member 3	NM_001167861|Wipf3|330319|WAS/WASL interacting protein family, member 3
mm9_v1_chr10_-_88720534_88720534	2.07531	HOX{A4,D4}.p2	BC065114|Ano4|320091|anoctamin 4	NM_178773|Ano4|320091|anoctamin 4
mm9_v1_chr14_+_76354807_76354815	2.06907	HOX{A4,D4}.p2	AK004465|Kctd4|67516|potassium channel tetramerisation domain containing 4	NM_026214|Kctd4|67516|potassium channel tetramerisation domain containing 4	AK008741|Kctd4|67516|potassium channel tetramerisation domain containing 4
mm9_v1_chr3_-_117063317_117063389	2.04989	HOX{A4,D4}.p2	BC082323|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137701|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	BC137702|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed	AK129149|D3Bwg0562e|229791|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm9_v1_chr8_+_46593141_46593271	2.046	HOX{A4,D4}.p2	AK171632|Sorbs2|234214|sorbin and SH3 domain containing 2	NM_172752|Sorbs2|234214|sorbin and SH3 domain containing 2	AK139388|Sorbs2|234214|sorbin and SH3 domain containing 2	BC151038|Sorbs2|234214|sorbin and SH3 domain containing 2	BC172140|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr15_-_8660442_8660451	2.04126	HOX{A4,D4}.p2	AK084968|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chrX_+_38754480_38754557	2.03682	HOX{A4,D4}.p2	NM_016886|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)	BC086678|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr9_+_44206431_44206438	2.02731	HOX{A4,D4}.p2	AK003620|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	AF080469|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr15_-_89256262_89256351	2.02369	HOX{A4,D4}.p2	AK029141|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	AF017174|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	NM_009948|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle	AK146851|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle
mm9_v1_chr3_-_109946095_109946180	2.01777	HOX{A4,D4}.p2	AB038667|Ntng1|80883|netrin G1	AK173075|Ntng1|80883|netrin G1
mm9_v1_chr11_+_67051128_67051361	2.00034	HOX{A4,D4}.p2	DQ066415|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066416|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066417|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AK138608|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	AY963801|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle	DQ066418|Myh4|17884|myosin, heavy polypeptide 4, skeletal muscle
mm9_v1_chr6_+_128349783_128350065	1.99757	HOX{A4,D4}.p2	AJ278170|Nrip2|60345|nuclear receptor interacting protein 2	NM_001162858|Nrip2|60345|nuclear receptor interacting protein 2	NM_021717|Nrip2|60345|nuclear receptor interacting protein 2	AK156526|Nrip2|60345|nuclear receptor interacting protein 2	AK134689|Nrip2|60345|nuclear receptor interacting protein 2	BC115523|Nrip2|60345|nuclear receptor interacting protein 2	BC094230|Nrip2|60345|nuclear receptor interacting protein 2
mm9_v1_chr2_+_120289460_120289608	1.99359	HOX{A4,D4}.p2	AF127766|Capn3|12335|calpain 3	BC107011|Capn3|12335|calpain 3	BC139790|Capn3|12335|calpain 3	X92523|Capn3|12335|calpain 3
mm9_v1_chr12_-_42212538_42212554	1.99333	HOX{A4,D4}.p2	AK036316|Lrrn3|16981|leucine rich repeat protein 3, neuronal	D49802|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr2_+_25513471_25513587	1.9876	HOX{A4,D4}.p2	AK136629|Lcn5|13863|lipocalin 5	AK021014|Lcn5|13863|lipocalin 5	AK162355|Lcn5|13863|lipocalin 5	NM_001042630|Lcn5|13863|lipocalin 5	NM_007947|Lcn5|13863|lipocalin 5	U68546|Lcn5|13863|lipocalin 5
mm9_v1_chr19_+_55700193_55700329	1.98589	HOX{A4,D4}.p2	
mm9_v1_chr2_-_92232731_92232888	1.98149	HOX{A4,D4}.p2	BC072578|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK147033|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AK053819|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr18_+_25224729_25224737	1.9781	HOX{A4,D4}.p2	BC060607|Fhod3|225288|formin homology 2 domain containing 3
mm9_v1_chr3_-_141645214_141645214	1.97797	HOX{A4,D4}.p2	BC065143|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B	NM_007560|Bmpr1b|12167|bone morphogenetic protein receptor, type 1B
mm9_v1_chr2_+_14525932_14526000	1.97476	HOX{A4,D4}.p2	AK034054|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	NM_023116|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	FM872408|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109156|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit	BC109157|Cacnb2|12296|calcium channel, voltage-dependent, beta 2 subunit
mm9_v1_chr7_-_110962324_110962382	1.96895	HOX{A4,D4}.p2	AB020013|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020015|Hbb-b1|15129|hemoglobin, beta adult major chain	AB020017|Hbb-b2|15130|hemoglobin, beta adult minor chain	AB364477|Hbb-b1|15129|hemoglobin, beta adult major chain	AB364478|Hbb-b2|15130|hemoglobin, beta adult minor chain	AF149782|Hbb-b2|15130|hemoglobin, beta adult minor chain
mm9_v1_chr9_+_44206258_44206258	1.96701	HOX{A4,D4}.p2	BC075655|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4	NM_008063|Slc37a4|14385|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm9_v1_chr11_-_30886243_30886320	1.94601	HOX{A4,D4}.p2	BC025100|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)	AK007629|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)
mm9_v1_chr3_-_122241909_122241984	1.93728	HOX{A4,D4}.p2	AK019185|Fnbp1l|214459|formin binding protein 1-like
mm9_v1_chr15_-_8660479_8660490	1.93551	HOX{A4,D4}.p2	AK045949|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK080879|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr15_+_12808445_12808493	1.93204	HOX{A4,D4}.p2	BC040801|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr16_+_17331507_17331521	1.92324	HOX{A4,D4}.p2	BC089610|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr2_+_174153230_174153414	1.91895	HOX{A4,D4}.p2	AK020895|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AF124383|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AK086715|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	BC062654|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	AY682719|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chrX_-_73088288_73088302	1.91101	HOX{A4,D4}.p2	AK146087|Pls3|102866|plastin 3 (T-isoform)	NM_001166454|Pls3|102866|plastin 3 (T-isoform)
mm9_v1_chr2_+_163843294_163843512	1.89504	HOX{A4,D4}.p2	AK206846|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK207996|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK212148|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK214843|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK215126|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	AK219468|Ywhab|54401|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
mm9_v1_chr2_-_130868412_130868417	1.89211	HOX{A4,D4}.p2	BC141873|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	BC111808|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276514|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276515|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276516|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	BC141874|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	NM_020014|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr18_+_43923976_43923988	1.88136	HOX{A4,D4}.p2	AK136373|Scgb3a2|117158|secretoglobin, family 3A, member 2	AK136396|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274959|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274960|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF274961|Scgb3a2|117158|secretoglobin, family 3A, member 2	BC061046|Scgb3a2|117158|secretoglobin, family 3A, member 2	NM_054038|Scgb3a2|117158|secretoglobin, family 3A, member 2	AF439546|Scgb3a2|117158|secretoglobin, family 3A, member 2
mm9_v1_chr11_+_100924916_100924968	1.8805	HOX{A4,D4}.p2	
mm9_v1_chr5_-_123064483_123064536	1.87991	HOX{A4,D4}.p2	BC055721|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AK161375|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AK013424|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	AF354757|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	NM_009879|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)	Y10495|Ift81|12589|intraflagellar transport 81 homolog (Chlamydomonas)
mm9_v1_chr17_+_70871393_70871416	1.86471	HOX{A4,D4}.p2	AK036307|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr4_-_60514761_60514831	1.86302	HOX{A4,D4}.p2	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	BC037152|Mup1|17840|major urinary protein 1	BC091775|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	M16355|Mup1|17840|major urinary protein 1	NM_001163010|Mup1|17840|major urinary protein 1	NM_001163011|Mup1|17840|major urinary protein 1	NM_031188|Mup1|17840|major urinary protein 1
mm9_v1_chr3_+_88373199_88373199	1.86195	HOX{A4,D4}.p2	AK207994|Ubqln4|94232|ubiquilin 4
mm9_v1_chr1_+_38108051_38108073	1.8606	HOX{A4,D4}.p2	AK037432|Eif5b|226982|eukaryotic translation initiation factor 5B
mm9_v1_chr6_+_97160736_97160744	1.85395	HOX{A4,D4}.p2	D87211|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr11_+_68913653_68913659	1.84792	HOX{A4,D4}.p2	AK148202|Per1|18626|period homolog 1 (Drosophila)	AK172958|Per1|18626|period homolog 1 (Drosophila)	NM_001159367|Per1|18626|period homolog 1 (Drosophila)
mm9_v1_chr11_-_21471829_21471936	1.84082	HOX{A4,D4}.p2	AK005237|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)	NM_008618|Mdh1|17449|malate dehydrogenase 1, NAD (soluble)
mm9_v1_chr11_+_67013553_67013615	1.83375	HOX{A4,D4}.p2	DQ021871|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AK041122|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	AY963800|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	BC108329|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult	NM_030679|Myh1|17879|myosin, heavy polypeptide 1, skeletal muscle, adult
mm9_v1_chr11_-_30886325_30886386	1.83245	HOX{A4,D4}.p2	AK010914|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)	AK021391|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)	AK078993|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)	NM_026527|Chac2|68044|ChaC, cation transport regulator homolog 2 (E. coli)
mm9_v1_chr12_+_53617063_53617093	1.83166	HOX{A4,D4}.p2	NM_009706|Arhgap5|11855|Rho GTPase activating protein 5	BC150823|Arhgap5|11855|Rho GTPase activating protein 5
mm9_v1_chr3_-_148617598_148617598	1.81258	HOX{A4,D4}.p2	NM_001081298|Lphn2|99633|latrophilin 2
mm9_v1_chr1_-_170362388_170362504	1.81257	HOX{A4,D4}.p2	NM_008783|Pbx1|18514|pre B-cell leukemia transcription factor 1	NM_183355|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr7_-_150085870_150085901	1.80552	HOX{A4,D4}.p2	M69200|Th|21823|tyrosine hydroxylase	NM_009377|Th|21823|tyrosine hydroxylase
mm9_v1_chr4_+_41774206_41774242	1.80279	HOX{A4,D4}.p2	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr6_-_92517359_92517359	1.78742	HOX{A4,D4}.p2	BC050793|Prickle2|243548|prickle homolog 2 (Drosophila)	NM_001134461|Prickle2|243548|prickle homolog 2 (Drosophila)
mm9_v1_chr15_-_48623520_48623540	1.7606	HOX{A4,D4}.p2	AK140264|Csmd3|239420|CUB and Sushi multiple domains 3	AK163122|Csmd3|239420|CUB and Sushi multiple domains 3	NM_001081391|Csmd3|239420|CUB and Sushi multiple domains 3
mm9_v1_chr8_-_3625251_3625286	1.75789	HOX{A4,D4}.p2	M21532|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_008790|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr2_-_92232506_92232632	1.75512	HOX{A4,D4}.p2	AF109769|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109770|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1	AF109771|Mapk8ip1|19099|mitogen-activated protein kinase 8 interacting protein 1
mm9_v1_chr6_-_92194629_92194641	1.7517	HOX{A4,D4}.p2	BC053493|Trh|22044|thyrotropin releasing hormone	AK010666|Trh|22044|thyrotropin releasing hormone	NM_009426|Trh|22044|thyrotropin releasing hormone
mm9_v1_chr15_-_89256252_89256259	1.74595	HOX{A4,D4}.p2	BC018270|Cpt1b|12895|carnitine palmitoyltransferase 1b, muscle
mm9_v1_chr11_-_99250663_99250679	1.73201	HOX{A4,D4}.p2	AK014360|Krt10|16661|keratin 10	V00830|Krt10|16661|keratin 10	AK076508|Krt10|16661|keratin 10	AK081914|Krt10|16661|keratin 10	AK081402|Krt10|16661|keratin 10	NM_010660|Krt10|16661|keratin 10
mm9_v1_chr10_+_55826722_55826737	1.72799	HOX{A4,D4}.p2	BC037487|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)	NM_001163833|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)	AK155382|Msl3l2|73390|male-specific lethal 3-like 2 (Drosophila)
mm9_v1_chr8_+_126329865_126330035	1.71895	HOX{A4,D4}.p2	NM_009003|Rab4a|19341|RAB4A, member RAS oncogene family	AK136566|Rab4a|19341|RAB4A, member RAS oncogene family	AK145452|Rab4a|19341|RAB4A, member RAS oncogene family	D86563|Rab4a|19341|RAB4A, member RAS oncogene family	AK161877|Rab4a|19341|RAB4A, member RAS oncogene family	BC138508|Rab4a|19341|RAB4A, member RAS oncogene family	AB232591|Rab4a|19341|RAB4A, member RAS oncogene family
mm9_v1_chr11_+_46049058_46049084	1.71665	HOX{A4,D4}.p2	AK081240|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	NM_177075|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	BC104394|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene	BC104395|C030019I05Rik|320116|RIKEN cDNA C030019I05 gene
mm9_v1_chr1_-_159342713_159342735	1.71439	HOX{A4,D4}.p2	AK039584|Rasal2|226525|RAS protein activator like 2	NM_177644|Rasal2|226525|RAS protein activator like 2
mm9_v1_chr18_-_61173753_61173875	1.69958	HOX{A4,D4}.p2	BC050103|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	BC057070|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	NM_201353|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	AK141581|Slc6a7|240332|solute carrier family 6 (neurotransmitter transporter, L-proline), member 7
mm9_v1_chr10_-_88067758_88067896	1.6983	HOX{A4,D4}.p2	BC062158|Mybpc1|109272|myosin binding protein C, slow-type	AK132188|Mybpc1|109272|myosin binding protein C, slow-type	NM_175418|Mybpc1|109272|myosin binding protein C, slow-type
mm9_v1_chr3_-_82853711_82853734	1.68553	HOX{A4,D4}.p2	BC031715|Fgb|110135|fibrinogen beta chain	NM_181849|Fgb|110135|fibrinogen beta chain	AK168626|Fgb|110135|fibrinogen beta chain	AK011920|Fgb|110135|fibrinogen beta chain	AK011118|Fgb|110135|fibrinogen beta chain	AK146960|Fgb|110135|fibrinogen beta chain
mm9_v1_chr6_+_72253241_72253241	1.68305	HOX{A4,D4}.p2	NM_147779|Sftpb|20388|surfactant associated protein B
mm9_v1_chr8_-_89996089_89996284	1.68088	HOX{A4,D4}.p2	AK161846|Cbln1|12404|cerebellin 1 precursor protein	BC051956|Cbln1|12404|cerebellin 1 precursor protein	BC055730|Cbln1|12404|cerebellin 1 precursor protein	BC132120|Cbln1|12404|cerebellin 1 precursor protein	BC132122|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr5_+_33361479_33361562	1.67585	HOX{A4,D4}.p2	AK149224|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AK083936|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	D87661|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	BC061497|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	AF077002|Ywhah|22629|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm9_v1_chr5_-_24606229_24606247	1.67158	HOX{A4,D4}.p2	BC015283|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr7_-_126602780_126602785	1.66806	HOX{A4,D4}.p2	BC119573|Gp2|67133|glycoprotein 2 (zymogen granule membrane)	AK009323|Gp2|67133|glycoprotein 2 (zymogen granule membrane)	AK009843|Gp2|67133|glycoprotein 2 (zymogen granule membrane)	AK009661|Gp2|67133|glycoprotein 2 (zymogen granule membrane)	NM_025989|Gp2|67133|glycoprotein 2 (zymogen granule membrane)
mm9_v1_chr4_-_86876311_86876327	1.66458	HOX{A4,D4}.p2	AK038634|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK034424|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	AK083127|Slc24a2|76376|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
mm9_v1_chr1_-_164796609_164796656	1.65883	HOX{A4,D4}.p2	U87456|Fmo1|14261|flavin containing monooxygenase 1
mm9_v1_chrX_+_63906333_63906333	1.6559	HOX{A4,D4}.p2	BC111888|Slitrk2|245450|SLIT and NTRK-like family, member 2	BC112406|Slitrk2|245450|SLIT and NTRK-like family, member 2	NM_198863|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr4_-_41720928_41721082	1.64874	HOX{A4,D4}.p2	BC099574|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164045|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001048179|Ccl27a|20301|chemokine (C-C motif) ligand 27A	NM_001164044|Ccl27a|20301|chemokine (C-C motif) ligand 27A
mm9_v1_chr15_+_6395311_6395349	1.64224	HOX{A4,D4}.p2	BC011137|C9|12279|complement component 9	NM_013485|C9|12279|complement component 9
mm9_v1_chrX_+_35953741_35953908	1.63945	HOX{A4,D4}.p2	AK087975|Mcts1|68995|malignant T cell amplified sequence 1	AK005292|Mcts1|68995|malignant T cell amplified sequence 1	NM_026902|Mcts1|68995|malignant T cell amplified sequence 1	BC010486|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chr6_-_115201866_115201882	1.63189	HOX{A4,D4}.p2	AK079347|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK140367|Timp4|110595|tissue inhibitor of metalloproteinase 4	NM_080639|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr1_-_74647935_74647979	1.6293	HOX{A4,D4}.p2	BC022715|Rnf25|57751|ring finger protein 25	AK171752|Rnf25|57751|ring finger protein 25	AF171060|Rnf25|57751|ring finger protein 25	BC037100|Rnf25|57751|ring finger protein 25	BC048821|Rnf25|57751|ring finger protein 25	AK002399|Rnf25|57751|ring finger protein 25	NM_021313|Rnf25|57751|ring finger protein 25
mm9_v1_chr10_-_101953046_101953066	1.6254	HOX{A4,D4}.p2	AF304160|Nts|67405|neurotensin	BC043024|Nts|67405|neurotensin	NM_024435|Nts|67405|neurotensin	AK017202|Nts|67405|neurotensin	AK017212|Nts|67405|neurotensin
mm9_v1_chr3_-_96097855_96097923	1.61918	HOX{A4,D4}.p2	BC025535|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143154|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143155|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143156|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143157|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143158|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143159|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143160|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143161|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143162|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143163|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143164|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143165|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143166|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143167|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143168|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143169|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143170|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143171|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143172|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143173|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143174|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143175|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143176|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143177|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143178|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143179|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143180|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143181|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143186|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143187|Fcgr1|14129|Fc receptor, IgG, high affinity I	AF143188|Fcgr1|14129|Fc receptor, IgG, high affinity I	X70980|Fcgr1|14129|Fc receptor, IgG, high affinity I	M31314|Fcgr1|14129|Fc receptor, IgG, high affinity I	AK033874|Fcgr1|14129|Fc receptor, IgG, high affinity I	NM_010186|Fcgr1|14129|Fc receptor, IgG, high affinity I
mm9_v1_chr14_+_14286471_14286627	1.61243	HOX{A4,D4}.p2	NM_001163032|Synpr|72003|synaptoporin	AK033999|Synpr|72003|synaptoporin	AK032442|Synpr|72003|synaptoporin	AK045705|Synpr|72003|synaptoporin	AK049661|Synpr|72003|synaptoporin
mm9_v1_chr11_+_103828032_103828117	1.60227	HOX{A4,D4}.p2	AK042977|Arf2|11841|ADP-ribosylation factor 2	AK077591|Arf2|11841|ADP-ribosylation factor 2	AK167653|Arf2|11841|ADP-ribosylation factor 2	AK167601|Arf2|11841|ADP-ribosylation factor 2	AK167133|Arf2|11841|ADP-ribosylation factor 2	AK169094|Arf2|11841|ADP-ribosylation factor 2	AK169412|Arf2|11841|ADP-ribosylation factor 2	D87899|Arf2|11841|ADP-ribosylation factor 2	AK031259|Arf2|11841|ADP-ribosylation factor 2
mm9_v1_chrX_+_132806184_132806337	1.59624	HOX{A4,D4}.p2	L10905|Ngfrap1|12070|nerve growth factor receptor (TNFRSF16) associated protein 1
mm9_v1_chr16_+_22951144_22951164	1.5898	HOX{A4,D4}.p2	NM_053176|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr3_-_115956312_115956401	1.57189	HOX{A4,D4}.p2	BC029939|Gpr88|64378|G-protein coupled receptor 88	AB042408|Gpr88|64378|G-protein coupled receptor 88	NM_022427|Gpr88|64378|G-protein coupled receptor 88
mm9_v1_chr17_+_35258394_35258523	1.56932	HOX{A4,D4}.p2	NM_001128597|Gpank1|81845|G patch domain and ankyrin repeats 1	AK028189|Gpank1|81845|G patch domain and ankyrin repeats 1	BC057902|Gpank1|81845|G patch domain and ankyrin repeats 1
mm9_v1_chr16_-_97392319_97392342	1.56088	HOX{A4,D4}.p2	AY005483|Dscam|13508|Down syndrome cell adhesion molecule	NM_031174|Dscam|13508|Down syndrome cell adhesion molecule
mm9_v1_chr17_+_24607576_24607746	1.55604	HOX{A4,D4}.p2	AK005906|Pgp|67078|phosphoglycolate phosphatase	AK013578|Pgp|67078|phosphoglycolate phosphatase
mm9_v1_chr9_+_20673178_20673179	1.54921	HOX{A4,D4}.p2	AK034516|A230050P20Rik|319278|RIKEN cDNA A230050P20 gene
mm9_v1_chr13_-_74460431_74460546	1.54335	HOX{A4,D4}.p2	
mm9_v1_chr11_+_75565381_75565439	1.5417	HOX{A4,D4}.p2	AX775993|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK192964|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK202856|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chr10_-_109437274_109437274	1.54138	HOX{A4,D4}.p2	NM_001081035|Nav3|260315|neuron navigator 3
mm9_v1_chr5_-_23012407_23012525	1.53942	HOX{A4,D4}.p2	AK044922|Srpk2|20817|serine/arginine-rich protein specific kinase 2	AK201776|Srpk2|20817|serine/arginine-rich protein specific kinase 2
mm9_v1_chr14_-_94287950_94288026	1.53191	HOX{A4,D4}.p2	NM_001081377|Pcdh9|211712|protocadherin 9	BC157952|Pcdh9|211712|protocadherin 9	BC172098|Pcdh9|211712|protocadherin 9	BC158114|Pcdh9|211712|protocadherin 9	BC158117|Pcdh9|211712|protocadherin 9
mm9_v1_chr6_+_87378995_87379026	1.5314	HOX{A4,D4}.p2	BC145044|Bmp10|12154|bone morphogenetic protein 10	BC145983|Bmp10|12154|bone morphogenetic protein 10	NM_009756|Bmp10|12154|bone morphogenetic protein 10	AF101033|Bmp10|12154|bone morphogenetic protein 10
mm9_v1_chr1_-_173152548_173152594	1.5312	HOX{A4,D4}.p2	AK012264|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr8_+_107800370_107800401	1.53096	HOX{A4,D4}.p2	BC053971|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK021023|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chr13_-_69877709_69877899	1.53092	HOX{A4,D4}.p2	BC058543|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116979|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1	BC116981|Ube2ql1|76980|ubiquitin-conjugating enzyme E2Q family-like 1
mm9_v1_chr2_+_128604653_128604725	1.52779	HOX{A4,D4}.p2	AK029009|Mertk|17289|c-mer proto-oncogene tyrosine kinase
mm9_v1_chr3_+_89263039_89263081	1.52361	HOX{A4,D4}.p2	NM_026784|Pmvk|68603|phosphomevalonate kinase
mm9_v1_chrX_-_92673432_92673467	1.51862	HOX{A4,D4}.p2	BC107257|Asb12|70392|ankyrin repeat and SOCS box-containing 12	AF403040|Asb12|70392|ankyrin repeat and SOCS box-containing 12	AK009644|Asb12|70392|ankyrin repeat and SOCS box-containing 12	NM_080858|Asb12|70392|ankyrin repeat and SOCS box-containing 12
mm9_v1_chr8_+_47095955_47095964	1.51632	HOX{A4,D4}.p2	BC051150|Lrp2bp|67620|Lrp2 binding protein	NM_026278|Lrp2bp|67620|Lrp2 binding protein	AK007202|Lrp2bp|67620|Lrp2 binding protein	AK015594|Lrp2bp|67620|Lrp2 binding protein
mm9_v1_chr6_-_115201846_115201865	1.51473	HOX{A4,D4}.p2	BC064046|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK038820|Timp4|110595|tissue inhibitor of metalloproteinase 4	AK040814|Timp4|110595|tissue inhibitor of metalloproteinase 4
mm9_v1_chr18_+_37828606_37828758	1.50511	HOX{A4,D4}.p2	AB093250|Pcdhga2|93710|protocadherin gamma subfamily A, 2	BC139178|Pcdhga2|93710|protocadherin gamma subfamily A, 2	AY013796|Pcdhga2|93710|protocadherin gamma subfamily A, 2	NM_033585|Pcdhga2|93710|protocadherin gamma subfamily A, 2
mm9_v1_chr19_-_5802596_5802674	1.50065	HOX{A4,D4}.p2	AK020134|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK019083|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK084336|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK088913|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	EF177380|Malat1|72289|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	AK009681|Ramp2|54409|receptor (calcitonin) activity modifying protein 2	AK028133|Ramp2|54409|receptor (calcitonin) activity modifying protein 2
mm9_v1_chr11_+_93905557_93905590	1.49978	HOX{A4,D4}.p2	BC052058|Spag9|70834|sperm associated antigen 9	BC060100|Spag9|70834|sperm associated antigen 9	BC094670|Spag9|70834|sperm associated antigen 9
mm9_v1_chr8_-_46380114_46380132	1.49688	HOX{A4,D4}.p2	BC026555|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr6_+_97160749_97160814	1.49288	HOX{A4,D4}.p2	AF421860|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK077826|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	NM_022992|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK076519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK088205|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF133912|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	BC003897|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK008519|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AK005259|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5	AF265214|Arl6ip5|65106|ADP-ribosylation factor-like 6 interacting protein 5
mm9_v1_chr5_-_24606422_24606505	1.49223	HOX{A4,D4}.p2	AK154296|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit	NM_145401|Prkag2|108099|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm9_v1_chr5_-_45190857_45190945	1.49102	HOX{A4,D4}.p2	U89487|Ldb2|16826|LIM domain binding 2	U89489|Ldb2|16826|LIM domain binding 2	BC079611|Ldb2|16826|LIM domain binding 2	AK147160|Ldb2|16826|LIM domain binding 2	AK146860|Ldb2|16826|LIM domain binding 2	NM_001077398|Ldb2|16826|LIM domain binding 2	NM_010698|Ldb2|16826|LIM domain binding 2
mm9_v1_chr17_+_43526389_43526484	1.4867	HOX{A4,D4}.p2	NM_001081178|Gpr116|224792|G protein-coupled receptor 116
mm9_v1_chr15_+_28133520_28133520	1.4696	HOX{A4,D4}.p2	AF466704|Dnahc5|110082|dynein, axonemal, heavy chain 5	AK054152|Dnahc5|110082|dynein, axonemal, heavy chain 5	NM_133365|Dnahc5|110082|dynein, axonemal, heavy chain 5
mm9_v1_chr15_+_32850477_32850629	1.46583	HOX{A4,D4}.p2	NM_008304|Sdc2|15529|syndecan 2	U00674|Sdc2|15529|syndecan 2	BC047144|Sdc2|15529|syndecan 2	AK011042|Sdc2|15529|syndecan 2
mm9_v1_chr8_-_46380165_46380188	1.4624	HOX{A4,D4}.p2	NM_008455|Klkb1|16621|kallikrein B, plasma 1
mm9_v1_chr7_+_140175699_140175731	1.45378	HOX{A4,D4}.p2	AJ250693|Zranb1|360216|zinc finger, RAN-binding domain containing 1
mm9_v1_chr10_-_24919916_24919967	1.45275	HOX{A4,D4}.p2	AK086696|Akap7|432442|A kinase (PRKA) anchor protein 7	AK085630|Akap7|432442|A kinase (PRKA) anchor protein 7	AK139238|Akap7|432442|A kinase (PRKA) anchor protein 7
mm9_v1_chr6_-_145383444_145383444	1.45095	HOX{A4,D4}.p2	AK016641|Ifltd1|74071|intermediate filament tail domain containing 1	NM_028742|Ifltd1|74071|intermediate filament tail domain containing 1
mm9_v1_chr10_+_69667423_69667431	1.44072	HOX{A4,D4}.p2	AK009351|2310015B20Rik|69563|RIKEN cDNA 2310015B20 gene
mm9_v1_chr17_+_72119030_72119041	1.44012	HOX{A4,D4}.p2	AK029962|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	NM_175378|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK018895|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK075758|Clip4|78785|CAP-GLY domain containing linker protein family, member 4	AK161301|Clip4|78785|CAP-GLY domain containing linker protein family, member 4
mm9_v1_chr6_+_90424727_90424917	1.4385	HOX{A4,D4}.p2	AK185404|Klf15|66277|Kruppel-like factor 15	AK211444|Klf15|66277|Kruppel-like factor 15
mm9_v1_chrX_-_7709907_7709983	1.43166	HOX{A4,D4}.p2	BC080853|Wdr13|73447|WD repeat domain 13	BC057366|Wdr13|73447|WD repeat domain 13	NM_026137|Wdr13|73447|WD repeat domain 13
mm9_v1_chr15_-_33617572_33617639	1.42115	HOX{A4,D4}.p2	AK087510|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	AK173253|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	BC079547|Tspyl5|239364|testis-specific protein, Y-encoded-like 5	NM_001085421|Tspyl5|239364|testis-specific protein, Y-encoded-like 5
mm9_v1_chr1_+_137949360_137949540	1.41887	HOX{A4,D4}.p2	L06234|Cacna1s|12292|calcium channel, voltage-dependent, L type, alpha 1S subunit	BC134369|Cacna1s|12292|calcium channel, voltage-dependent, L type, alpha 1S subunit	NM_001081023|Cacna1s|12292|calcium channel, voltage-dependent, L type, alpha 1S subunit	NM_014193|Cacna1s|12292|calcium channel, voltage-dependent, L type, alpha 1S subunit	AK143541|Cacna1s|12292|calcium channel, voltage-dependent, L type, alpha 1S subunit
mm9_v1_chr7_-_15031917_15031936	1.41433	HOX{A4,D4}.p2	EU486167|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK041070|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	NM_175250|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	EU486166|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr5_-_17341713_17341713	1.40664	HOX{A4,D4}.p2	NM_001159555|Cd36|12491|CD36 antigen	NM_007643|Cd36|12491|CD36 antigen
mm9_v1_chr2_-_130868823_130868823	1.40026	HOX{A4,D4}.p2	AJ276870|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276871|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	AJ276872|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4	NM_001136063|Gfra4|14588|glial cell line derived neurotrophic factor family receptor alpha 4
mm9_v1_chr14_+_55506625_55506792	1.39708	HOX{A4,D4}.p2	AK020321|Bcl2l2|12050|BCL2-like 2	AK020923|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr12_+_85702978_85703016	1.39076	HOX{A4,D4}.p2	BC106183|Coq6|217707|coenzyme Q6 homolog (yeast)	AK167380|Coq6|217707|coenzyme Q6 homolog (yeast)	AK170311|Coq6|217707|coenzyme Q6 homolog (yeast)	AK077863|Coq6|217707|coenzyme Q6 homolog (yeast)	BC051055|Coq6|217707|coenzyme Q6 homolog (yeast)	BC024135|Coq6|217707|coenzyme Q6 homolog (yeast)
mm9_v1_chr15_+_12754582_12754660	1.38782	HOX{A4,D4}.p2	AK144147|Drosha|14000|drosha, ribonuclease type III	BC088999|Drosha|14000|drosha, ribonuclease type III	AK148640|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr4_-_42787449_42787524	1.38766	HOX{A4,D4}.p2	AF001980|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC025974|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC028747|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AK155924|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_011124|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	AK144258|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	NM_001193667|Gm1987|100504362|predicted gene 1987
mm9_v1_chr6_+_141634834_141634916	1.38607	HOX{A4,D4}.p2	
mm9_v1_chr5_-_141096711_141096848	1.38368	HOX{A4,D4}.p2	AK019322|Ttyh3|78339|tweety homolog 3 (Drosophila)
mm9_v1_chr14_+_52513284_52513333	1.37955	HOX{A4,D4}.p2	NM_001039676|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	BC113769|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	AK170178|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2	AK089322|Slc39a2|214922|solute carrier family 39 (zinc transporter), member 2
mm9_v1_chr10_-_51351236_51351263	1.37871	HOX{A4,D4}.p2	AY735399|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY735400|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY735401|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	AY101365|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	BC108998|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A	NM_153071|Gprc6a|210198|G protein-coupled receptor, family C, group 6, member A
mm9_v1_chr17_-_27717411_27717581	1.37806	HOX{A4,D4}.p2	AK195385|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK205576|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK003601|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3	AK211644|Nudt3|56409|nudix (nucleotide diphosphate linked moiety X)-type motif 3
mm9_v1_chr9_+_21731914_21732108	1.37272	HOX{A4,D4}.p2	AK011114|Ccdc159|67119|coiled-coil domain containing 159	NM_001164614|Ccdc159|67119|coiled-coil domain containing 159	NM_025977|Ccdc159|67119|coiled-coil domain containing 159	BC120702|Ccdc159|67119|coiled-coil domain containing 159	BC120704|Ccdc159|67119|coiled-coil domain containing 159	BC145014|Ccdc159|67119|coiled-coil domain containing 159	AK148448|Ccdc159|67119|coiled-coil domain containing 159	AK042884|Ccdc159|67119|coiled-coil domain containing 159	AK016073|Ccdc159|67119|coiled-coil domain containing 159
mm9_v1_chr4_-_60736086_60736197	1.36306	HOX{A4,D4}.p2	AJ309921|Mup10|100039008|major urinary protein 10	BC012221|Mup1|17840|major urinary protein 1	BC013649|Mup1|17840|major urinary protein 1	BC106092|Mup1|17840|major urinary protein 1	M28649|Mup1|17840|major urinary protein 1	M16355|Mup1|17840|major urinary protein 1
mm9_v1_chr16_+_17331463_17331501	1.36196	HOX{A4,D4}.p2	NM_008223|Serpind1|15160|serine (or cysteine) peptidase inhibitor, clade D, member 1
mm9_v1_chr15_-_8660462_8660476	1.3617	HOX{A4,D4}.p2	AK031831|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK040798|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK049090|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK082736|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	U75377|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr4_-_61100653_61100734	1.35977	HOX{A4,D4}.p2	NM_001045550|Mup2|17841|major urinary protein 2	NM_008647|Mup2|17841|major urinary protein 2
mm9_v1_chr11_+_95353403_95353542	1.35765	HOX{A4,D4}.p2	
mm9_v1_chr2_-_160773804_160773823	1.34934	HOX{A4,D4}.p2	AK017414|Chd6|71389|chromodomain helicase DNA binding protein 6
mm9_v1_chr9_-_54509658_54509691	1.34589	HOX{A4,D4}.p2	AB050554|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1	NM_053178|Acsbg1|94180|acyl-CoA synthetase bubblegum family member 1
mm9_v1_chr19_+_20676453_20676504	1.34527	HOX{A4,D4}.p2	M74570|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC044729|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC054386|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	NM_013467|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	BC035322|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1	S75713|Aldh1a1|11668|aldehyde dehydrogenase family 1, subfamily A1
mm9_v1_chr17_-_65929913_65929945	1.34196	HOX{A4,D4}.p2	
mm9_v1_chr8_+_47576483_47576510	1.33807	HOX{A4,D4}.p2	AK161189|Acsl1|14081|acyl-CoA synthetase long-chain family member 1
mm9_v1_chr19_+_12040311_12040373	1.33648	HOX{A4,D4}.p2	NM_001033174|Osbp|76303|oxysterol binding protein
mm9_v1_chr14_+_120724163_120724175	1.33442	HOX{A4,D4}.p2	BC075665|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr19_+_8907691_8907773	1.3324	HOX{A4,D4}.p2	AK004010|Hnrnpul2|68693|heterogeneous nuclear ribonucleoprotein U-like 2
mm9_v1_chr17_+_70871444_70871503	1.33109	HOX{A4,D4}.p2	NM_001128180|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK161941|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1	AK163689|Dlgap1|224997|discs, large (Drosophila) homolog-associated protein 1
mm9_v1_chr3_-_32884000_32884000	1.32739	HOX{A4,D4}.p2	AK006035|Pex5l|58869|peroxisomal biogenesis factor 5-like	NM_001163517|Pex5l|58869|peroxisomal biogenesis factor 5-like
mm9_v1_chr5_+_96802973_96802973	1.32556	HOX{A4,D4}.p2	AJ489280|Fras1|231470|Fraser syndrome 1 homolog (human)	NM_175473|Fras1|231470|Fraser syndrome 1 homolog (human)
mm9_v1_chr8_+_46744023_46744252	1.32262	HOX{A4,D4}.p2	AK079130|Sorbs2|234214|sorbin and SH3 domain containing 2	AK140498|Sorbs2|234214|sorbin and SH3 domain containing 2	AK050951|Sorbs2|234214|sorbin and SH3 domain containing 2	BC039163|Sorbs2|234214|sorbin and SH3 domain containing 2
mm9_v1_chr8_-_108467275_108467292	1.32099	HOX{A4,D4}.p2	AK004914|Lcat|16816|lecithin cholesterol acyltransferase	J05154|Lcat|16816|lecithin cholesterol acyltransferase	BC028861|Lcat|16816|lecithin cholesterol acyltransferase
mm9_v1_chr3_-_27795287_27795289	1.3107	HOX{A4,D4}.p2	AK053134|Tmem212|208613|transmembrane protein 212	BC119391|Tmem212|208613|transmembrane protein 212	BC119393|Tmem212|208613|transmembrane protein 212	NM_001164437|Tmem212|208613|transmembrane protein 212
mm9_v1_chr19_+_38598686_38598698	1.3036	HOX{A4,D4}.p2	AB076247|Plce1|74055|phospholipase C, epsilon 1	NM_019588|Plce1|74055|phospholipase C, epsilon 1	BC138349|Plce1|74055|phospholipase C, epsilon 1	BC138350|Plce1|74055|phospholipase C, epsilon 1	BC145246|Plce1|74055|phospholipase C, epsilon 1
mm9_v1_chr3_-_90318178_90318313	1.3016	HOX{A4,D4}.p2	AK017279|S100a1|20193|S100 calcium binding protein A1	AK168822|S100a1|20193|S100 calcium binding protein A1	AK002721|S100a1|20193|S100 calcium binding protein A1	AF087687|S100a1|20193|S100 calcium binding protein A1	AK012578|S100a1|20193|S100 calcium binding protein A1	NM_011309|S100a1|20193|S100 calcium binding protein A1	BC005590|S100a1|20193|S100 calcium binding protein A1
mm9_v1_chr11_+_29642059_29642120	1.30107	HOX{A4,D4}.p2	AK213159|Rtn4|68585|reticulon 4	AK218108|Rtn4|68585|reticulon 4
mm9_v1_chr5_-_89886732_89886828	1.30023	HOX{A4,D4}.p2	M55413|Gc|14473|group specific component	AK010965|Gc|14473|group specific component	BC010762|Gc|14473|group specific component	BC051395|Gc|14473|group specific component	NM_008096|Gc|14473|group specific component
mm9_v1_chr7_+_137720997_137721002	1.29926	HOX{A4,D4}.p2	AY177410|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_001004468|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	NM_206856|Tacc2|57752|transforming, acidic coiled-coil containing protein 2	BC109016|Tacc2|57752|transforming, acidic coiled-coil containing protein 2
mm9_v1_chr16_+_37580238_37580255	1.29728	HOX{A4,D4}.p2	NM_013547|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr9_-_29219306_29219337	1.29266	HOX{A4,D4}.p2	AF282980|Ntm|235106|neurotrimin	BC023307|Ntm|235106|neurotrimin
mm9_v1_chr10_+_23571267_23571295	1.29227	HOX{A4,D4}.p2	NM_011979|Vnn3|26464|vanin 3	AJ132103|Vnn3|26464|vanin 3	BC111521|Vnn3|26464|vanin 3
mm9_v1_chr8_-_93659394_93659394	1.28872	HOX{A4,D4}.p2	NM_010241|Aktip|14339|thymoma viral proto-oncogene 1 interacting protein
mm9_v1_chrX_+_53708015_53708070	1.28563	HOX{A4,D4}.p2	NM_172779|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK031945|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	BC051161|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK083942|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B	AK160627|Ddx26b|236790|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm9_v1_chr8_-_70434808_70434844	1.26513	HOX{A4,D4}.p2	BC052365|Psd3|234353|pleckstrin and Sec7 domain containing 3	AK161498|Psd3|234353|pleckstrin and Sec7 domain containing 3	NM_030263|Psd3|234353|pleckstrin and Sec7 domain containing 3
mm9_v1_chr9_-_75238110_75238135	1.25785	HOX{A4,D4}.p2	BC024684|Mapk6|50772|mitogen-activated protein kinase 6
mm9_v1_chr13_+_43466084_43466084	1.25735	HOX{A4,D4}.p2	BC031770|Sirt5|68346|sirtuin 5 (silent mating type information regulation 2 homolog) 5 (S. cerevisiae)	NM_178848|Sirt5|68346|sirtuin 5 (silent mating type information regulation 2 homolog) 5 (S. cerevisiae)
mm9_v1_chr4_+_102243132_102243254	1.25693	HOX{A4,D4}.p2	AK171700|Pde4b|18578|phosphodiesterase 4B, cAMP specific	AK150868|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr14_+_120724380_120724561	1.2564	HOX{A4,D4}.p2	BC020406|Mbnl2|105559|muscleblind-like 2	BC026711|Mbnl2|105559|muscleblind-like 2	GQ906534|Mbnl2|105559|muscleblind-like 2	AK216404|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr11_+_100442831_100442963	1.2554	HOX{A4,D4}.p2	AK217119|Cnp|12799|2',3'-cyclic nucleotide 3' phosphodiesterase
mm9_v1_chr1_+_6720087_6720131	1.24261	HOX{A4,D4}.p2	AB097467|St18|240690|suppression of tumorigenicity 18	AJ536155|St18|240690|suppression of tumorigenicity 18	AK032557|St18|240690|suppression of tumorigenicity 18	NM_173868|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr1_-_141982814_141983012	1.24136	HOX{A4,D4}.p2	AK075670|Cfh|12628|complement component factor h	M31980|Cfh|12628|complement component factor h
mm9_v1_chr19_-_38298593_38298596	1.24126	HOX{A4,D4}.p2	AK077572|5730455O13Rik|70567|RIKEN cDNA 5730455O13 gene
mm9_v1_chr1_-_74982118_74982188	1.23996	HOX{A4,D4}.p2	BC150939|Ccdc108|241116|coiled-coil domain containing 108	AK038623|Ccdc108|241116|coiled-coil domain containing 108	AK046272|Ccdc108|241116|coiled-coil domain containing 108	AK133278|Ccdc108|241116|coiled-coil domain containing 108	NM_001039495|Ccdc108|241116|coiled-coil domain containing 108
mm9_v1_chr2_-_30952019_30952019	1.2353	HOX{A4,D4}.p2	AK143512|Fnbp1|14269|formin binding protein 1	NM_001177650|Fnbp1|14269|formin binding protein 1
mm9_v1_chr8_-_9771020_9771022	1.23522	HOX{A4,D4}.p2	BC117535|Fam155a|270028|family with sequence similarity 155, member A	AK032202|Fam155a|270028|family with sequence similarity 155, member A	NM_173446|Fam155a|270028|family with sequence similarity 155, member A
mm9_v1_chr4_+_137798218_137798221	1.23235	HOX{A4,D4}.p2	AK218342|Hp1bp3|15441|heterochromatin protein 1, binding protein 3
mm9_v1_chr8_-_98412220_98412268	1.23143	HOX{A4,D4}.p2	U82470|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	J02622|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	NM_010325|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr14_-_35401654_35401841	1.23007	HOX{A4,D4}.p2	AF228057|Ldb3|24131|LIM domain binding 3	AF228058|Ldb3|24131|LIM domain binding 3	AY206011|Ldb3|24131|LIM domain binding 3	AY206015|Ldb3|24131|LIM domain binding 3	AK172980|Ldb3|24131|LIM domain binding 3	NM_001039074|Ldb3|24131|LIM domain binding 3	BC138793|Ldb3|24131|LIM domain binding 3	BC145420|Ldb3|24131|LIM domain binding 3	AK142292|Ldb3|24131|LIM domain binding 3	AF114378|Ldb3|24131|LIM domain binding 3	AY206012|Ldb3|24131|LIM domain binding 3	AF114379|Ldb3|24131|LIM domain binding 3	AY206013|Ldb3|24131|LIM domain binding 3	BC099596|Ldb3|24131|LIM domain binding 3
mm9_v1_chr12_-_79944026_79944112	1.22893	HOX{A4,D4}.p2	
mm9_v1_chrX_-_133277456_133277461	1.22537	HOX{A4,D4}.p2	NM_001168227|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr15_-_8660393_8660418	1.22239	HOX{A4,D4}.p2	BC028638|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	BC066154|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3	AK045716|Slc1a3|20512|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm9_v1_chr8_+_96335202_96335227	1.21904	HOX{A4,D4}.p2	M36778|Gnao1|14681|guanine nucleotide binding protein, alpha O	M36777|Gnao1|14681|guanine nucleotide binding protein, alpha O
mm9_v1_chr19_-_38298606_38298649	1.21898	HOX{A4,D4}.p2	NM_001081075|5730455O13Rik|70567|RIKEN cDNA 5730455O13 gene	AK172241|5730455O13Rik|70567|RIKEN cDNA 5730455O13 gene	AK017666|5730455O13Rik|70567|RIKEN cDNA 5730455O13 gene
mm9_v1_chr10_-_62666659_62666699	1.21385	HOX{A4,D4}.p2	AK036458|Mypn|68802|myopalladin	AK220521|Mypn|68802|myopalladin	NM_182992|Mypn|68802|myopalladin
mm9_v1_chr14_-_37748753_37748753	1.21255	HOX{A4,D4}.p2	AK005931|Gcap14|72972|granule cell antiserum positive 14	BC048641|Gcap14|72972|granule cell antiserum positive 14	BC060947|Gcap14|72972|granule cell antiserum positive 14	NM_028407|Gcap14|72972|granule cell antiserum positive 14
mm9_v1_chr7_+_28474358_28474458	1.20316	HOX{A4,D4}.p2	NM_001112731|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK140966|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene	AK141645|C030039L03Rik|112415|RIKEN cDNA C030039L03 gene
mm9_v1_chrX_+_140127827_140127856	1.20291	HOX{A4,D4}.p2	AF082297|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195046|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	NM_001195047|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496262|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AJ496263|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943853|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3	AM943854|Pak3|18481|p21 protein (Cdc42/Rac)-activated kinase 3
mm9_v1_chr7_-_109166668_109166710	1.19614	HOX{A4,D4}.p2	AF122907|Il18bp|16068|interleukin 18 binding protein	NM_010531|Il18bp|16068|interleukin 18 binding protein	AK003370|Il18bp|16068|interleukin 18 binding protein
mm9_v1_chr5_+_29524545_29524545	1.18995	HOX{A4,D4}.p2	AF190664|Rnf32|56874|ring finger protein 32	NM_021470|Rnf32|56874|ring finger protein 32
mm9_v1_chrX_+_38754568_38754592	1.18837	HOX{A4,D4}.p2	AK138615|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr19_-_44471675_44471892	1.18648	HOX{A4,D4}.p2	AK012370|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr16_-_31314534_31314685	1.18631	HOX{A4,D4}.p2	X82648|Apod|11815|apolipoprotein D	AK158118|Apod|11815|apolipoprotein D	AK157925|Apod|11815|apolipoprotein D	AK135046|Apod|11815|apolipoprotein D	AK157917|Apod|11815|apolipoprotein D	AK160729|Apod|11815|apolipoprotein D	AK162392|Apod|11815|apolipoprotein D	NM_007470|Apod|11815|apolipoprotein D	AK158405|Apod|11815|apolipoprotein D
mm9_v1_chr17_-_30749484_30749588	1.18395	HOX{A4,D4}.p2	DQ487161|Glo1|109801|glyoxalase 1	DQ487162|Glo1|109801|glyoxalase 1	AK002386|Glo1|109801|glyoxalase 1	AK031832|Glo1|109801|glyoxalase 1	AK003567|Glo1|109801|glyoxalase 1	AK005215|Glo1|109801|glyoxalase 1	BC081432|Glo1|109801|glyoxalase 1	AK049703|Glo1|109801|glyoxalase 1	AK005055|Glo1|109801|glyoxalase 1
mm9_v1_chr12_-_60305853_60305917	1.18378	HOX{A4,D4}.p2	BC006669|Fbxo33|70611|F-box protein 33
mm9_v1_chr2_+_181115939_181116074	1.18074	HOX{A4,D4}.p2	AF115339|Lime1|72699|Lck interacting transmembrane adaptor 1	NM_023684|Lime1|72699|Lck interacting transmembrane adaptor 1	AK172632|Lime1|72699|Lck interacting transmembrane adaptor 1
mm9_v1_chr16_+_22951183_22951214	1.17974	HOX{A4,D4}.p2	AY135662|Hrg|94175|histidine-rich glycoprotein	AB055897|Hrg|94175|histidine-rich glycoprotein	BC011168|Hrg|94175|histidine-rich glycoprotein	AF194028|Hrg|94175|histidine-rich glycoprotein
mm9_v1_chr12_+_85702917_85702967	1.17589	HOX{A4,D4}.p2	BC132168|Coq6|217707|coenzyme Q6 homolog (yeast)	BC132170|Coq6|217707|coenzyme Q6 homolog (yeast)	NM_172582|Coq6|217707|coenzyme Q6 homolog (yeast)	BC088736|Coq6|217707|coenzyme Q6 homolog (yeast)	AK131889|Coq6|217707|coenzyme Q6 homolog (yeast)
mm9_v1_chr19_+_30020236_30020283	1.17341	HOX{A4,D4}.p2	AK075849|Il33|77125|interleukin 33	NM_001164724|Il33|77125|interleukin 33
mm9_v1_chr11_+_16157685_16157805	1.17223	HOX{A4,D4}.p2	AK033048|Vstm2a|211739|V-set and transmembrane domain containing 2A	NM_145967|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK032473|Vstm2a|211739|V-set and transmembrane domain containing 2A	BC027127|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK079096|Vstm2a|211739|V-set and transmembrane domain containing 2A	AK137363|Vstm2a|211739|V-set and transmembrane domain containing 2A
mm9_v1_chr12_+_101348348_101348406	1.16679	HOX{A4,D4}.p2	AK161641|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK161723|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK133926|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK088411|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK148906|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	BC003860|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK166783|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1	AK169015|Psmc1|19179|protease (prosome, macropain) 26S subunit, ATPase 1
mm9_v1_chr17_-_24211852_24211965	1.1633	HOX{A4,D4}.p2	AK079579|Pdpk1|18607|3-phosphoinositide dependent protein kinase 1
mm9_v1_chrX_+_35954355_35954475	1.15494	HOX{A4,D4}.p2	AK138385|Mcts1|68995|malignant T cell amplified sequence 1	BC037103|Mcts1|68995|malignant T cell amplified sequence 1
mm9_v1_chrX_-_49034548_49034559	1.15413	HOX{A4,D4}.p2	BC047151|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2	AK052348|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr2_+_20431673_20431673	1.15122	HOX{A4,D4}.p2	AB125594|Etl4|208618|enhancer trap locus 4	AB125595|Etl4|208618|enhancer trap locus 4	NM_029895|Etl4|208618|enhancer trap locus 4	NM_178059|Etl4|208618|enhancer trap locus 4
mm9_v1_chr14_+_47451832_47451844	1.14969	HOX{A4,D4}.p2	AK154797|Cgrrf1|68755|cell growth regulator with ring finger domain 1
mm9_v1_chr5_-_101083995_101084232	1.14618	HOX{A4,D4}.p2	AK213124|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	AK209340|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	AK211081|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)	AK213346|Coq2|71883|coenzyme Q2 homolog, prenyltransferase (yeast)
mm9_v1_chr11_-_94837640_94837640	1.14426	HOX{A4,D4}.p2	AB024920|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)	NM_009161|Sgca|20391|sarcoglycan, alpha (dystrophin-associated glycoprotein)
mm9_v1_chr11_-_42134509_42134538	1.14376	HOX{A4,D4}.p2	X51986|Gabra6|14399|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
mm9_v1_chr18_+_69753035_69753127	1.14182	HOX{A4,D4}.p2	AK014343|Tcf4|21413|transcription factor 4	U16321|Tcf4|21413|transcription factor 4	AK132140|Tcf4|21413|transcription factor 4	BC014293|Tcf4|21413|transcription factor 4
mm9_v1_chr7_-_135020290_135020344	1.13794	HOX{A4,D4}.p2	BC028251|Zfp668|244219|zinc finger protein 668	AK047593|Zfp668|244219|zinc finger protein 668	AK081436|Zfp668|244219|zinc finger protein 668	AK053438|Zfp668|244219|zinc finger protein 668	NM_146259|Zfp668|244219|zinc finger protein 668	AK169556|Zfp668|244219|zinc finger protein 668
mm9_v1_chr8_+_107572489_107572523	1.13647	HOX{A4,D4}.p2	NM_001164681|Ces3a|382053|carboxylesterase 3A	NM_198672|Ces3a|382053|carboxylesterase 3A	AK138932|Ces3a|382053|carboxylesterase 3A	BC061004|Ces3a|382053|carboxylesterase 3A	BC035526|Ces3a|382053|carboxylesterase 3A	BC057187|Ces3a|382053|carboxylesterase 3A	BC057188|Ces3a|382053|carboxylesterase 3A	BC048380|Ces3a|382053|carboxylesterase 3A	L11333|Ces3a|382053|carboxylesterase 3A	S64130|Ces3a|382053|carboxylesterase 3A
mm9_v1_chr3_+_133903056_133903111	1.13416	HOX{A4,D4}.p2	NM_001004367|Cxxc4|319478|CXXC finger 4
mm9_v1_chr9_+_56266618_56266679	1.13381	HOX{A4,D4}.p2	AK088542|Hmg20a|66867|high mobility group 20A	AK032790|Hmg20a|66867|high mobility group 20A	AK039222|Hmg20a|66867|high mobility group 20A	AK004596|Hmg20a|66867|high mobility group 20A	AK086346|Hmg20a|66867|high mobility group 20A	AK154075|Hmg20a|66867|high mobility group 20A	BC013804|Hmg20a|66867|high mobility group 20A	DQ182735|Hmg20a|66867|high mobility group 20A	NM_025812|Hmg20a|66867|high mobility group 20A	AL355705|Hmg20a|66867|high mobility group 20A
mm9_v1_chr15_+_12754561_12754569	1.13183	HOX{A4,D4}.p2	NM_001130149|Drosha|14000|drosha, ribonuclease type III	NM_026799|Drosha|14000|drosha, ribonuclease type III
mm9_v1_chr11_-_115940157_115940300	1.12976	HOX{A4,D4}.p2	
mm9_v1_chr14_-_35401845_35401867	1.12858	HOX{A4,D4}.p2	AK084461|Ldb3|24131|LIM domain binding 3	AK137181|Ldb3|24131|LIM domain binding 3	AJ005621|Ldb3|24131|LIM domain binding 3	NM_001039071|Ldb3|24131|LIM domain binding 3	NM_001039072|Ldb3|24131|LIM domain binding 3	NM_001039073|Ldb3|24131|LIM domain binding 3	NM_001039075|Ldb3|24131|LIM domain binding 3	NM_001039076|Ldb3|24131|LIM domain binding 3	NM_011918|Ldb3|24131|LIM domain binding 3	AK004020|Ldb3|24131|LIM domain binding 3
mm9_v1_chr10_+_98453513_98453709	1.12071	HOX{A4,D4}.p2	AK053569|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1	AK042547|Atp2b1|67972|ATPase, Ca++ transporting, plasma membrane 1
mm9_v1_chr13_-_100286446_100286519	1.11978	HOX{A4,D4}.p2	BC019183|Mtap1b|17755|microtubule-associated protein 1B	BC046287|Mtap1b|17755|microtubule-associated protein 1B	BC052016|Mtap1b|17755|microtubule-associated protein 1B	BC078457|Mtap1b|17755|microtubule-associated protein 1B	BC138033|Mtap1b|17755|microtubule-associated protein 1B	BC138034|Mtap1b|17755|microtubule-associated protein 1B	BC037105|Mtap1b|17755|microtubule-associated protein 1B	X51396|Mtap1b|17755|microtubule-associated protein 1B	AK158307|Mtap1b|17755|microtubule-associated protein 1B
mm9_v1_chr5_-_146691425_146691448	1.11963	HOX{A4,D4}.p2	BC094062|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	X60452|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	BC010528|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	NM_007818|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11	AK149433|Cyp3a11|13112|cytochrome P450, family 3, subfamily a, polypeptide 11
mm9_v1_chr16_+_88729106_88729106	1.11551	HOX{A4,D4}.p2	BC027551|Krtap13-1|268905|keratin associated protein 13-1	NM_183189|Krtap13-1|268905|keratin associated protein 13-1
mm9_v1_chr6_+_113433408_113433466	1.11184	HOX{A4,D4}.p2	AK042344|Creld1|171508|cysteine-rich with EGF-like domains 1	AK077726|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr6_+_73221007_73221091	1.1116	HOX{A4,D4}.p2	AK204482|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr9_-_40153864_40153891	1.10988	HOX{A4,D4}.p2	BC070451|Gramd1b|235283|GRAM domain containing 1B
mm9_v1_chr17_-_46155601_46155620	1.10375	HOX{A4,D4}.p2	AK031905|Vegfa|22339|vascular endothelial growth factor A
mm9_v1_chr5_-_137755938_137756050	1.09996	HOX{A4,D4}.p2	
mm9_v1_chr8_+_119984482_119984512	1.09718	HOX{A4,D4}.p2	AK020023|4933407C03Rik|74440|RIKEN cDNA 4933407C03 gene
mm9_v1_chrX_+_160876032_160876036	1.09472	HOX{A4,D4}.p2	AK004396|Asb11|68854|ankyrin repeat and SOCS box-containing 11	NM_026853|Asb11|68854|ankyrin repeat and SOCS box-containing 11	BC064047|Asb11|68854|ankyrin repeat and SOCS box-containing 11
mm9_v1_chr4_+_13711928_13711928	1.09161	HOX{A4,D4}.p2	D32007|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	NM_009822|Runx1t1|12395|runt-related transcription factor 1; translocated to, 1 (cyclin D-related)
mm9_v1_chr13_-_8870975_8870975	1.08968	HOX{A4,D4}.p2	NM_001039388|Wdr37|207615|WD repeat domain 37
mm9_v1_chrX_+_98644459_98644503	1.08271	HOX{A4,D4}.p2	BC030035|Itgb1bp2|26549|integrin beta 1 binding protein 2	AF140691|Itgb1bp2|26549|integrin beta 1 binding protein 2
mm9_v1_chr17_-_51965912_51965912	1.082	HOX{A4,D4}.p2	NM_001163631|Satb1|20230|special AT-rich sequence binding protein 1
mm9_v1_chr10_+_59764990_59765134	1.08182	HOX{A4,D4}.p2	AK179432|Psap|19156|prosaposin	AK202324|Psap|19156|prosaposin	AK202355|Psap|19156|prosaposin
mm9_v1_chr1_+_173053280_173053294	1.07781	HOX{A4,D4}.p2	BC061017|1700009P17Rik|75472|RIKEN cDNA 1700009P17 gene
mm9_v1_chr10_+_18189773_18189786	1.07736	HOX{A4,D4}.p2	BC030842|Nhsl1|215819|NHS-like 1	NM_001163592|Nhsl1|215819|NHS-like 1
mm9_v1_chr8_-_25707414_25707480	1.07031	HOX{A4,D4}.p2	BC049931|Ido1|15930|indoleamine 2,3-dioxygenase 1	M69109|Ido1|15930|indoleamine 2,3-dioxygenase 1	NM_008324|Ido1|15930|indoleamine 2,3-dioxygenase 1
mm9_v1_chr8_+_94192087_94192089	1.06807	HOX{A4,D4}.p2	
mm9_v1_chr3_-_146433544_146433656	1.06383	HOX{A4,D4}.p2	AK163585|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	AK148728|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta	NM_001164199|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chrX_+_38754605_38754612	1.05904	HOX{A4,D4}.p2	BC076584|Gria3|53623|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm9_v1_chr7_-_52230179_52230183	1.05897	HOX{A4,D4}.p2	AK035790|Cpt1c|78070|carnitine palmitoyltransferase 1c
mm9_v1_chr18_+_37467108_37467135	1.05839	HOX{A4,D4}.p2	AK036169|Pcdhb4|93875|protocadherin beta 4	AK143280|Pcdhb4|93875|protocadherin beta 4	AK160730|Pcdhb4|93875|protocadherin beta 4	NM_053129|Pcdhb4|93875|protocadherin beta 4	AK029277|Pcdhb4|93875|protocadherin beta 4	BC053098|Pcdhb4|93875|protocadherin beta 4
mm9_v1_chr4_-_148500769_148500849	1.05651	HOX{A4,D4}.p2	AF013253|Cort|12854|cortistatin	AK013496|Cort|12854|cortistatin	NM_007745|Cort|12854|cortistatin
mm9_v1_chr18_-_33623287_33623340	1.03455	HOX{A4,D4}.p2	NM_053078|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr3_+_94217197_94217322	1.03075	HOX{A4,D4}.p2	BC057030|Tdrkh|72634|tudor and KH domain containing protein	BC031886|Tdrkh|72634|tudor and KH domain containing protein	BC049363|Tdrkh|72634|tudor and KH domain containing protein	NM_028307|Tdrkh|72634|tudor and KH domain containing protein
mm9_v1_chr19_+_58744854_58744860	1.0222	HOX{A4,D4}.p2	AK007357|Pnlip|69060|pancreatic lipase	BC061061|Pnlip|69060|pancreatic lipase	NM_026925|Pnlip|69060|pancreatic lipase
mm9_v1_chr17_+_46818005_46818130	1.02177	HOX{A4,D4}.p2	AK010863|Mea1|17256|male enhanced antigen 1	AK008305|Mea1|17256|male enhanced antigen 1	AK008194|Mea1|17256|male enhanced antigen 1	AK010904|Mea1|17256|male enhanced antigen 1	AK010962|Mea1|17256|male enhanced antigen 1	AK012617|Mea1|17256|male enhanced antigen 1	AK005369|Mea1|17256|male enhanced antigen 1	AK005106|Mea1|17256|male enhanced antigen 1	L10401|Mea1|17256|male enhanced antigen 1	M27938|Mea1|17256|male enhanced antigen 1	NM_010787|Mea1|17256|male enhanced antigen 1	AK011189|Mea1|17256|male enhanced antigen 1	D17341|Mea1|17256|male enhanced antigen 1
mm9_v1_chr9_-_16182674_16182674	1.02147	HOX{A4,D4}.p2	NM_001080814|Fat3|270120|FAT tumor suppressor homolog 3 (Drosophila)
mm9_v1_chr17_-_35258136_35258391	1.01163	HOX{A4,D4}.p2	AK012369|Csnk2b|13001|casein kinase 2, beta polypeptide	X56502|Csnk2b|13001|casein kinase 2, beta polypeptide	AK010730|Csnk2b|13001|casein kinase 2, beta polypeptide	AK002903|Csnk2b|13001|casein kinase 2, beta polypeptide	X52959|Csnk2b|13001|casein kinase 2, beta polypeptide	AK146186|Csnk2b|13001|casein kinase 2, beta polypeptide	BC003775|Csnk2b|13001|casein kinase 2, beta polypeptide	AK161330|Csnk2b|13001|casein kinase 2, beta polypeptide	NM_009975|Csnk2b|13001|casein kinase 2, beta polypeptide
mm9_v1_chr3_-_72860864_72860987	1.01116	HOX{A4,D4}.p2	BC066059|Slitrk3|386750|SLIT and NTRK-like family, member 3	NM_198864|Slitrk3|386750|SLIT and NTRK-like family, member 3	AK139378|Slitrk3|386750|SLIT and NTRK-like family, member 3
mm9_v1_chr10_-_7357774_7357973	1.00009	HOX{A4,D4}.p2	AK179354|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	S72473|Pcmt1|18537|protein-L-isoaspartate (D-aspartate) O-methyltransferase 1
mm9_v1_chr14_+_55502200_55502231	0.991666	HOX{A4,D4}.p2	AK004680|Bcl2l2|12050|BCL2-like 2
mm9_v1_chr1_-_170362298_170362315	0.987612	HOX{A4,D4}.p2	AK045252|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144346|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK144446|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr12_-_42212337_42212337	0.987024	HOX{A4,D4}.p2	BC069041|Lrrn3|16981|leucine rich repeat protein 3, neuronal	NM_010733|Lrrn3|16981|leucine rich repeat protein 3, neuronal
mm9_v1_chr3_-_10197187_10197261	0.986821	HOX{A4,D4}.p2	AK161314|Fabp9|21884|fatty acid binding protein 9, testis	AK005745|Fabp9|21884|fatty acid binding protein 9, testis	BC048437|Fabp9|21884|fatty acid binding protein 9, testis	NM_011598|Fabp9|21884|fatty acid binding protein 9, testis
mm9_v1_chr7_+_51079913_51079927	0.978451	HOX{A4,D4}.p2	AK138218|Klk6|19144|kallikrein related-peptidase 6	NM_001164696|Klk6|19144|kallikrein related-peptidase 6	NM_001164697|Klk6|19144|kallikrein related-peptidase 6	NM_001164698|Klk6|19144|kallikrein related-peptidase 6	AB015206|Klk6|19144|kallikrein related-peptidase 6	AB008928|Klk6|19144|kallikrein related-peptidase 6
mm9_v1_chr11_+_94189524_94189598	0.963988	HOX{A4,D4}.p2	AK017451|Ankrd40|71452|ankyrin repeat domain 40	L10902|Ankrd40|71452|ankyrin repeat domain 40
mm9_v1_chr18_-_16966954_16967033	0.963618	HOX{A4,D4}.p2	AK087418|Cdh2|12558|cadherin 2	BC022107|Cdh2|12558|cadherin 2	AK032826|Cdh2|12558|cadherin 2
mm9_v1_chr11_+_89891661_89891661	0.96293	HOX{A4,D4}.p2	AK007878|Tmem100|67888|transmembrane protein 100	NM_026433|Tmem100|67888|transmembrane protein 100
mm9_v1_chr10_+_57365674_57365674	0.958889	HOX{A4,D4}.p2	BC061162|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039052|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific	NM_001039053|Pkib|18768|protein kinase inhibitor beta, cAMP dependent, testis specific
mm9_v1_chr2_+_174167172_174167173	0.956108	HOX{A4,D4}.p2	BC048834|Gnas|14683|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm9_v1_chr14_-_66832383_66832388	0.954596	HOX{A4,D4}.p2	BC137704|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	BC144849|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta	NM_001162366|Ptk2b|19229|PTK2 protein tyrosine kinase 2 beta
mm9_v1_chrY_-_622984_622997	0.953771	HOX{A4,D4}.p2	BC021453|Ddx3y|26900|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
mm9_v1_chr8_-_98412302_98412339	0.946988	HOX{A4,D4}.p2	BC089341|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK147953|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr6_+_88775664_88775919	0.945741	HOX{A4,D4}.p2	AK195256|Mgll|23945|monoglyceride lipase	AK199521|Mgll|23945|monoglyceride lipase	AK213425|Mgll|23945|monoglyceride lipase	AK185298|Mgll|23945|monoglyceride lipase	AK186020|Mgll|23945|monoglyceride lipase	AK190741|Mgll|23945|monoglyceride lipase	AK191234|Mgll|23945|monoglyceride lipase	AK191381|Mgll|23945|monoglyceride lipase	AK193146|Mgll|23945|monoglyceride lipase	AK194428|Mgll|23945|monoglyceride lipase	AK195163|Mgll|23945|monoglyceride lipase	AK195208|Mgll|23945|monoglyceride lipase	AK197913|Mgll|23945|monoglyceride lipase	AK198715|Mgll|23945|monoglyceride lipase	AK199057|Mgll|23945|monoglyceride lipase	AK200299|Mgll|23945|monoglyceride lipase	AK202265|Mgll|23945|monoglyceride lipase	AK202325|Mgll|23945|monoglyceride lipase	AK208993|Mgll|23945|monoglyceride lipase	AK214675|Mgll|23945|monoglyceride lipase	AK136867|Mgll|23945|monoglyceride lipase
mm9_v1_chr4_+_138433841_138433860	0.945233	HOX{A4,D4}.p2	AK148187|Pla2g2e|26970|phospholipase A2, group IIE	AF112984|Pla2g2e|26970|phospholipase A2, group IIE	NM_012044|Pla2g2e|26970|phospholipase A2, group IIE	AF166098|Pla2g2e|26970|phospholipase A2, group IIE
mm9_v1_chr9_-_64062342_64062398	0.941965	HOX{A4,D4}.p2	AK165664|Map2k1|26395|mitogen-activated protein kinase kinase 1
mm9_v1_chr1_+_133737686_133737717	0.941237	HOX{A4,D4}.p2	BC037033|Slc41a1|98396|solute carrier family 41, member 1
mm9_v1_chr8_-_108467294_108467304	0.938359	HOX{A4,D4}.p2	AK149476|Lcat|16816|lecithin cholesterol acyltransferase	NM_008490|Lcat|16816|lecithin cholesterol acyltransferase
mm9_v1_chr8_-_42140113_42140147	0.935226	HOX{A4,D4}.p2	BC043321|Mtus1|102103|mitochondrial tumor suppressor 1	AK043214|Mtus1|102103|mitochondrial tumor suppressor 1	AY626782|Mtus1|102103|mitochondrial tumor suppressor 1	NM_001005864|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr17_-_27650285_27650347	0.93283	HOX{A4,D4}.p2	BC072635|Grm4|268934|glutamate receptor, metabotropic 4
mm9_v1_chr3_+_5218545_5218658	0.929244	HOX{A4,D4}.p2	AK084213|Zfhx4|80892|zinc finger homeodomain 4	BC061199|Zfhx4|80892|zinc finger homeodomain 4	NM_030708|Zfhx4|80892|zinc finger homeodomain 4	AK044540|Zfhx4|80892|zinc finger homeodomain 4
mm9_v1_chr14_-_60845511_60845640	0.924907	HOX{A4,D4}.p2	AK145818|BC010981|407830|cDNA sequence BC010981
mm9_v1_chr6_-_97202685_97202773	0.92358	HOX{A4,D4}.p2	AK052890|Lmod3|320502|leiomodin 3 (fetal)	BC127157|Lmod3|320502|leiomodin 3 (fetal)	AK030676|Lmod3|320502|leiomodin 3 (fetal)	NM_001081157|Lmod3|320502|leiomodin 3 (fetal)
mm9_v1_chr6_+_113433507_113433615	0.921799	HOX{A4,D4}.p2	BC029065|Creld1|171508|cysteine-rich with EGF-like domains 1	AK155777|Creld1|171508|cysteine-rich with EGF-like domains 1	AB009020|Creld1|171508|cysteine-rich with EGF-like domains 1	BC010804|Creld1|171508|cysteine-rich with EGF-like domains 1	BC023893|Creld1|171508|cysteine-rich with EGF-like domains 1	NM_133930|Creld1|171508|cysteine-rich with EGF-like domains 1
mm9_v1_chr19_-_57271875_57272120	0.911005	HOX{A4,D4}.p2	AF404775|Ablim1|226251|actin-binding LIM protein 1	AK143907|Ablim1|226251|actin-binding LIM protein 1	NM_001103177|Ablim1|226251|actin-binding LIM protein 1	AK122196|Ablim1|226251|actin-binding LIM protein 1
mm9_v1_chr1_-_174149963_174149971	0.910129	HOX{A4,D4}.p2	BC064057|Casq1|12372|calsequestrin 1	U93291|Casq1|12372|calsequestrin 1
mm9_v1_chr16_-_16504310_16504310	0.909147	HOX{A4,D4}.p2	AF402612|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4	NM_139233|Fgd4|224014|FYVE, RhoGEF and PH domain containing 4
mm9_v1_chr17_+_13253969_13254189	0.903303	HOX{A4,D4}.p2	AK077165|Tcp10c|21462|t-complex protein 10c	NM_009341|Tcp10c|21462|t-complex protein 10c	X58170|Tcp10c|21462|t-complex protein 10c	X58171|Tcp10b|21461|t-complex protein 10b	BC050771|Tcp10b|21461|t-complex protein 10b	NM_009340|Tcp10a|21460|t-complex protein 10a	X58169|Tcp10a|21460|t-complex protein 10a	M22598|Tcp10c|21462|t-complex protein 10c
mm9_v1_chr11_+_29642253_29642464	0.887853	HOX{A4,D4}.p2	AK186869|Rtn4|68585|reticulon 4	AK186438|Rtn4|68585|reticulon 4	AK047253|Rtn4|68585|reticulon 4
mm9_v1_chr2_-_180689328_180689372	0.884365	HOX{A4,D4}.p2	EF058055|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058056|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	EF058057|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	BC089330|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AB030182|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK007632|Nkain4|58237|Na+/K+ transporting ATPase interacting 4	AK005262|Nkain4|58237|Na+/K+ transporting ATPase interacting 4
mm9_v1_chr3_+_36962577_36962599	0.880376	HOX{A4,D4}.p2	NM_009350|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	X84693|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)	BC107346|Adad1|21744|adenosine deaminase domain containing 1 (testis specific)
mm9_v1_chrX_-_7318412_7318449	0.879776	HOX{A4,D4}.p2	BC053918|Ccdc120|54648|coiled-coil domain containing 120	NM_207202|Ccdc120|54648|coiled-coil domain containing 120
mm9_v1_chr9_+_31923720_31923720	0.878141	HOX{A4,D4}.p2	NM_001195632|Arhgap32|330914|Rho GTPase activating protein 32
mm9_v1_chr17_-_59130757_59130797	0.874435	HOX{A4,D4}.p2	BC034642|2610034M16Rik|69239|RIKEN cDNA 2610034M16 gene	BC033350|2610034M16Rik|69239|RIKEN cDNA 2610034M16 gene	NM_027001|2610034M16Rik|69239|RIKEN cDNA 2610034M16 gene
mm9_v1_chrX_-_92853721_92853847	0.874094	HOX{A4,D4}.p2	AK129302|Zc4h2|245522|zinc finger, C4H2 domain containing	AK162005|Zc4h2|245522|zinc finger, C4H2 domain containing	AK086554|Zc4h2|245522|zinc finger, C4H2 domain containing	BC050850|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119285|Zc4h2|245522|zinc finger, C4H2 domain containing	BC119311|Zc4h2|245522|zinc finger, C4H2 domain containing	BC079862|Zc4h2|245522|zinc finger, C4H2 domain containing	NM_001003916|Zc4h2|245522|zinc finger, C4H2 domain containing	AK155445|Zc4h2|245522|zinc finger, C4H2 domain containing
mm9_v1_chr3_-_146433200_146433208	0.873201	HOX{A4,D4}.p2	NM_001164198|Prkacb|18749|protein kinase, cAMP dependent, catalytic, beta
mm9_v1_chr17_-_30749591_30749606	0.868035	HOX{A4,D4}.p2	NM_001113560|Glo1|109801|glyoxalase 1	NM_025374|Glo1|109801|glyoxalase 1
mm9_v1_chr15_+_39577477_39577489	0.864686	HOX{A4,D4}.p2	AB109560|Tm7sf4|75766|transmembrane 7 superfamily member 4	AB109561|Tm7sf4|75766|transmembrane 7 superfamily member 4	AK014697|Tm7sf4|75766|transmembrane 7 superfamily member 4	AK154384|Tm7sf4|75766|transmembrane 7 superfamily member 4	AY517483|Tm7sf4|75766|transmembrane 7 superfamily member 4	AY517484|Tm7sf4|75766|transmembrane 7 superfamily member 4	AY517485|Tm7sf4|75766|transmembrane 7 superfamily member 4	NM_029422|Tm7sf4|75766|transmembrane 7 superfamily member 4	BC139146|Tm7sf4|75766|transmembrane 7 superfamily member 4	BC145557|Tm7sf4|75766|transmembrane 7 superfamily member 4	BC145558|Tm7sf4|75766|transmembrane 7 superfamily member 4
mm9_v1_chr15_-_59848167_59848172	0.863913	HOX{A4,D4}.p2	AK016789|4933412E24Rik|71088|RIKEN cDNA 4933412E24 gene	NM_027668|4933412E24Rik|71088|RIKEN cDNA 4933412E24 gene
mm9_v1_chr6_-_128531620_128531628	0.858407	HOX{A4,D4}.p2	AK138836|BC048546|232400|cDNA sequence BC048546	NM_001001179|BC048546|232400|cDNA sequence BC048546	AK161184|BC048546|232400|cDNA sequence BC048546
mm9_v1_chr1_+_82721477_82721553	0.857871	HOX{A4,D4}.p2	BC059229|Mff|75734|mitochondrial fission factor	NM_029409|Mff|75734|mitochondrial fission factor	AK017226|Mff|75734|mitochondrial fission factor	AK083056|Mff|75734|mitochondrial fission factor	AK139649|Mff|75734|mitochondrial fission factor
mm9_v1_chr1_+_174249713_174249834	0.846921	HOX{A4,D4}.p2	
mm9_v1_chr13_-_97804287_97804316	0.845871	HOX{A4,D4}.p2	AK006488|1700029F12Rik|66479|RIKEN cDNA 1700029F12 gene	BC049576|1700029F12Rik|66479|RIKEN cDNA 1700029F12 gene	AK006036|1700029F12Rik|66479|RIKEN cDNA 1700029F12 gene	NM_001080777|1700029F12Rik|66479|RIKEN cDNA 1700029F12 gene	NM_025585|1700029F12Rik|66479|RIKEN cDNA 1700029F12 gene
mm9_v1_chr8_+_109555200_109555247	0.845795	HOX{A4,D4}.p2	AK159117|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK047821|Vps4a|116733|vacuolar protein sorting 4a (yeast)	BC018368|Vps4a|116733|vacuolar protein sorting 4a (yeast)	NM_126165|Vps4a|116733|vacuolar protein sorting 4a (yeast)	AK169949|Vps4a|116733|vacuolar protein sorting 4a (yeast)
mm9_v1_chr17_+_74154214_74154436	0.842508	HOX{A4,D4}.p2	AK051717|Ehd3|57440|EH-domain containing 3	AF506002|Ehd3|57440|EH-domain containing 3	BC046596|Ehd3|57440|EH-domain containing 3
mm9_v1_chr19_-_4877874_4877883	0.839165	HOX{A4,D4}.p2	BC111890|Actn3|11474|actinin alpha 3	AF093775|Actn3|11474|actinin alpha 3	NM_013456|Actn3|11474|actinin alpha 3
mm9_v1_chr6_-_93863547_93863683	0.838118	HOX{A4,D4}.p2	AK163800|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083321|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	BC060273|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	NM_001083320|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr3_-_62409061_62409061	0.837429	HOX{A4,D4}.p2	AK136826|Gpr149|229357|G protein-coupled receptor 149	NM_177346|Gpr149|229357|G protein-coupled receptor 149
mm9_v1_chr14_+_73992436_73992469	0.837291	HOX{A4,D4}.p2	AK003867|Sucla2|20916|succinate-Coenzyme A ligase, ADP-forming, beta subunit
mm9_v1_chr19_-_40261753_40261779	0.829946	HOX{A4,D4}.p2	BC022151|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC023894|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AY227736|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC034831|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	BC016494|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	AK050082|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70	NM_145499|Cyp2c70|226105|cytochrome P450, family 2, subfamily c, polypeptide 70
mm9_v1_chr7_-_116879475_116879535	0.827552	HOX{A4,D4}.p2	AK194605|Tmem9b|56786|TMEM9 domain family, member B
mm9_v1_chrX_+_54043764_54043779	0.824001	HOX{A4,D4}.p2	BC055725|Fhl1|14199|four and a half LIM domains 1
mm9_v1_chr10_-_18463500_18463563	0.821156	HOX{A4,D4}.p2	AK165602|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK148343|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147963|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	AK147679|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed	NM_001033258|D10Bwg1379e|215821|DNA segment, Chr 10, Brigham & Women's Genetics 1379 expressed
mm9_v1_chr18_-_23200150_23200199	0.820373	HOX{A4,D4}.p2	AK006244|Nol4|319211|nucleolar protein 4	AK031008|Nol4|319211|nucleolar protein 4	NM_199024|Nol4|319211|nucleolar protein 4	AK005959|Nol4|319211|nucleolar protein 4
mm9_v1_chr4_-_42393043_42393079	0.817032	HOX{A4,D4}.p2	NM_011335|Ccl21b|100042493|chemokine (C-C motif) ligand 21B (leucine)	U88322|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	BC038120|Ccl21a|18829|chemokine (C-C motif) ligand 21A (serine)	BC087957|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)	NM_001193666|Gm13304|100504346|predicted gene 13304	NM_001193668|Gm10591|100504239|predicted gene 10591	NM_023052|Ccl21c|65956|chemokine (C-C motif) ligand 21C (leucine)
mm9_v1_chr5_+_114830841_114830887	0.81579	HOX{A4,D4}.p2	BC023956|Ube3b|117146|ubiquitin protein ligase E3B
mm9_v1_chr18_+_38456280_38456312	0.809897	HOX{A4,D4}.p2	NM_001164622|Rnf14|56736|ring finger protein 14	NM_020012|Rnf14|56736|ring finger protein 14
mm9_v1_chr5_-_124637176_124637203	0.809499	HOX{A4,D4}.p2	AK129364|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	BC070452|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr17_+_19190456_19190456	0.805612	HOX{A4,D4}.p2	NM_001104550|Vmn2r98|224552|vomeronasal 2, receptor 98
mm9_v1_chr5_-_124666426_124666426	0.803789	HOX{A4,D4}.p2	AF058693|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2	NM_011256|Pitpnm2|19679|phosphatidylinositol transfer protein, membrane-associated 2
mm9_v1_chr19_-_44476302_44476309	0.800498	HOX{A4,D4}.p2	AK135642|Scd1|20249|stearoyl-Coenzyme A desaturase 1
mm9_v1_chr4_-_102699296_102699446	0.799356	HOX{A4,D4}.p2	AF054843|Insl5|23919|insulin-like 5	BC010968|Insl5|23919|insulin-like 5	AF076971|Insl5|23919|insulin-like 5	AF133817|Insl5|23919|insulin-like 5	NM_011831|Insl5|23919|insulin-like 5	AF054842|Insl5|23919|insulin-like 5
mm9_v1_chr4_-_9570815_9570863	0.784652	HOX{A4,D4}.p2	AF302654|Asph|65973|aspartate-beta-hydroxylase	AF289490|Asph|65973|aspartate-beta-hydroxylase	AF289491|Asph|65973|aspartate-beta-hydroxylase	AF289492|Asph|65973|aspartate-beta-hydroxylase	AF221854|Asph|65973|aspartate-beta-hydroxylase	AF223413|Asph|65973|aspartate-beta-hydroxylase	NM_001177852|Asph|65973|aspartate-beta-hydroxylase	NM_001177853|Asph|65973|aspartate-beta-hydroxylase	NM_001177854|Asph|65973|aspartate-beta-hydroxylase	NM_133723|Asph|65973|aspartate-beta-hydroxylase
mm9_v1_chr2_+_62502329_62502489	0.781235	HOX{A4,D4}.p2	AK046347|Gca|227960|grancalcin	AK050540|Gca|227960|grancalcin	AK033740|Gca|227960|grancalcin	AK040549|Gca|227960|grancalcin	AK049317|Gca|227960|grancalcin	AK078915|Gca|227960|grancalcin	NM_145523|Gca|227960|grancalcin	AF518325|Gca|227960|grancalcin	BC021450|Gca|227960|grancalcin	AB088388|Gca|227960|grancalcin
mm9_v1_chr7_+_17460662_17460665	0.779506	HOX{A4,D4}.p2	DQ832319|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)	NM_001081655|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr6_-_82889660_82889681	0.778601	HOX{A4,D4}.p2	AK158292|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	BC139232|Sema4f|20355|sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain
mm9_v1_chr13_-_21545556_21545633	0.77556	HOX{A4,D4}.p2	AK156196|Zfp187|432731|zinc finger protein 187	NM_001013786|Zfp187|432731|zinc finger protein 187
mm9_v1_chr3_+_94938009_94938098	0.770305	HOX{A4,D4}.p2	AK154180|Lysmd1|217779|LysM, putative peptidoglycan-binding, domain containing 1	NM_153121|Lysmd1|217779|LysM, putative peptidoglycan-binding, domain containing 1	BC024838|Lysmd1|217779|LysM, putative peptidoglycan-binding, domain containing 1	AK054348|Lysmd1|217779|LysM, putative peptidoglycan-binding, domain containing 1	AK011517|Lysmd1|217779|LysM, putative peptidoglycan-binding, domain containing 1
mm9_v1_chr16_+_37580303_37580398	0.768715	HOX{A4,D4}.p2	BC024369|Hgd|15233|homogentisate 1, 2-dioxygenase	BC037628|Hgd|15233|homogentisate 1, 2-dioxygenase	AK050193|Hgd|15233|homogentisate 1, 2-dioxygenase	BC044758|Hgd|15233|homogentisate 1, 2-dioxygenase	AK002584|Hgd|15233|homogentisate 1, 2-dioxygenase
mm9_v1_chr3_-_98367865_98367960	0.766441	HOX{A4,D4}.p2	NM_001111336|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC132402|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	BC013449|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	L16919|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	AK146749|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	NM_008294|Hsd3b4|15495|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4
mm9_v1_chr18_+_37915375_37915594	0.765694	HOX{A4,D4}.p2	BC064675|Pcdhga11|93723|protocadherin gamma subfamily A, 11	NM_033594|Pcdhga11|93723|protocadherin gamma subfamily A, 11	BC059837|Pcdhga11|93723|protocadherin gamma subfamily A, 11	AY013794|Pcdhga11|93723|protocadherin gamma subfamily A, 11
mm9_v1_chr2_+_173563060_173563229	0.762797	HOX{A4,D4}.p2	BC048231|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	NM_019806|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	BC057123|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK050632|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK081908|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AF115504|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK160925|Vapb|56491|vesicle-associated membrane protein, associated protein B and C	AK172080|Vapb|56491|vesicle-associated membrane protein, associated protein B and C
mm9_v1_chr18_-_36925819_36925867	0.751396	HOX{A4,D4}.p2	AY321066|Dnd1|213236|dead end homolog 1 (zebrafish)	AK141343|Dnd1|213236|dead end homolog 1 (zebrafish)	BC034897|Dnd1|213236|dead end homolog 1 (zebrafish)	NM_173383|Dnd1|213236|dead end homolog 1 (zebrafish)
mm9_v1_chr15_+_6395353_6395370	0.746396	HOX{A4,D4}.p2	X05475|C9|12279|complement component 9
mm9_v1_chr7_+_72838302_72838367	0.746375	HOX{A4,D4}.p2	NM_026795|Tm2d3|68634|TM2 domain containing 3	NM_178056|Tm2d3|68634|TM2 domain containing 3	AK003917|Tm2d3|68634|TM2 domain containing 3	BC024620|Tm2d3|68634|TM2 domain containing 3
mm9_v1_chr2_+_152241322_152241322	0.745081	HOX{A4,D4}.p2	AK078482|6820408C15Rik|228778|RIKEN cDNA 6820408C15 gene	NM_177656|6820408C15Rik|228778|RIKEN cDNA 6820408C15 gene
mm9_v1_chr2_-_34916915_34916960	0.741397	HOX{A4,D4}.p2	M35525|Hc|15139|hemolytic complement	M35526|Hc|15139|hemolytic complement	AK080166|Hc|15139|hemolytic complement	NM_010406|Hc|15139|hemolytic complement
mm9_v1_chr9_+_7464140_7464186	0.739307	HOX{A4,D4}.p2	AK049552|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	BC117756|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	NM_032006|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)	AJ278462|Mmp1a|83995|matrix metallopeptidase 1a (interstitial collagenase)
mm9_v1_chr17_-_34740422_34740567	0.738524	HOX{A4,D4}.p2	BC012031|Rnf5|54197|ring finger protein 5	AK012729|Rnf5|54197|ring finger protein 5	AK020514|Rnf5|54197|ring finger protein 5	BC016449|Rnf5|54197|ring finger protein 5	NM_019403|Rnf5|54197|ring finger protein 5	AK019289|Rnf5|54197|ring finger protein 5	AK020515|Rnf5|54197|ring finger protein 5	AK010792|Rnf5|54197|ring finger protein 5
mm9_v1_chr2_-_120346171_120346284	0.735971	HOX{A4,D4}.p2	AF060245|Zfp106|20402|zinc finger protein 106	AK029313|Zfp106|20402|zinc finger protein 106
mm9_v1_chr17_+_80706746_80706746	0.735752	HOX{A4,D4}.p2	NM_001145452|Arhgef33|381112|Rho guanine nucleotide exchange factor (GEF) 33
mm9_v1_chr14_-_61877218_61877326	0.733259	HOX{A4,D4}.p2	BC138960|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	BC138961|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AB024922|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AK132610|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	AF282901|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)	NM_011892|Sgcg|24053|sarcoglycan, gamma (dystrophin-associated glycoprotein)
mm9_v1_chr18_+_52927362_52927362	0.72433	HOX{A4,D4}.p2	AK132346|Sncaip|67847|synuclein, alpha interacting protein (synphilin)	NM_026408|Sncaip|67847|synuclein, alpha interacting protein (synphilin)
mm9_v1_chr5_-_113510602_113510603	0.72322	HOX{A4,D4}.p2	NM_001159650|Crybb3|12962|crystallin, beta B3	NM_021352|Crybb3|12962|crystallin, beta B3
mm9_v1_chr9_-_21731772_21731905	0.721648	HOX{A4,D4}.p2	AB030201|Tmem205|235043|transmembrane protein 205	BC010787|Tmem205|235043|transmembrane protein 205	NM_178577|Tmem205|235043|transmembrane protein 205
mm9_v1_chr7_-_138465593_138465805	0.720289	HOX{A4,D4}.p2	BC140992|Cuzd1|16433|CUB and zona pellucida-like domains 1	NM_008411|Cuzd1|16433|CUB and zona pellucida-like domains 1	U69699|Cuzd1|16433|CUB and zona pellucida-like domains 1
mm9_v1_chr1_-_152313294_152313294	0.718473	HOX{A4,D4}.p2	AB034730|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	AK149469|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_001110146|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	NM_021400|Prg4|96875|proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
mm9_v1_chr14_+_120705667_120705677	0.713832	HOX{A4,D4}.p2	AK153261|Mbnl2|105559|muscleblind-like 2	AK167694|Mbnl2|105559|muscleblind-like 2
mm9_v1_chr16_-_37385024_37385045	0.711684	HOX{A4,D4}.p2	AK043658|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114611|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114612|Stxbp5l|207227|syntaxin binding protein 5-like	NM_001114613|Stxbp5l|207227|syntaxin binding protein 5-like	NM_172440|Stxbp5l|207227|syntaxin binding protein 5-like
mm9_v1_chrX_+_71002395_71002441	0.709504	HOX{A4,D4}.p2	AK138168|Plxnb3|140571|plexin B3	AK138631|Plxnb3|140571|plexin B3	AK140240|Plxnb3|140571|plexin B3	NM_019587|Plxnb3|140571|plexin B3
mm9_v1_chrX_-_131285919_131285957	0.708591	HOX{A4,D4}.p2	BC027264|Armcx6|278097|armadillo repeat containing, X-linked 6	AK148507|Armcx6|278097|armadillo repeat containing, X-linked 6	AK160766|Armcx6|278097|armadillo repeat containing, X-linked 6	NM_001007578|Armcx6|278097|armadillo repeat containing, X-linked 6
mm9_v1_chr10_-_87937335_87937390	0.704739	HOX{A4,D4}.p2	AK080245|Chpt1|212862|choline phosphotransferase 1
mm9_v1_chr2_-_30683705_30683840	0.703017	HOX{A4,D4}.p2	AY665653|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK088890|Asb6|72323|ankyrin repeat and SOCS box-containing 6	BC085485|Asb6|72323|ankyrin repeat and SOCS box-containing 6	BC019192|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK010909|Asb6|72323|ankyrin repeat and SOCS box-containing 6	AK049312|Asb6|72323|ankyrin repeat and SOCS box-containing 6	NM_133346|Asb6|72323|ankyrin repeat and SOCS box-containing 6
mm9_v1_chr1_-_55283189_55283376	0.701868	HOX{A4,D4}.p2	BC026871|Rftn2|74013|raftlin family member 2	AK014318|Rftn2|74013|raftlin family member 2
mm9_v1_chrX_+_7990430_7990457	0.70127	HOX{A4,D4}.p2	AK006218|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	AK015135|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	AY244792|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	NM_026492|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	BC145538|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	BC145541|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	BC171964|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1
mm9_v1_chr19_+_43514902_43514932	0.698959	HOX{A4,D4}.p2	NM_031396|Cnnm1|83674|cyclin M1
mm9_v1_chr1_-_174825081_174825085	0.694897	HOX{A4,D4}.p2	BC061125|Apcs|20219|serum amyloid P-component
mm9_v1_chr10_+_117641997_117642023	0.691204	HOX{A4,D4}.p2	AJ249491|Il22|50929|interleukin 22	BC104348|Il22|50929|interleukin 22	BC104349|Il22|50929|interleukin 22	NM_016971|Il22|50929|interleukin 22	BC116235|Il22|50929|interleukin 22
mm9_v1_chr14_-_69151731_69151797	0.686958	HOX{A4,D4}.p2	AF013107|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK136692|Adam7|11500|a disintegrin and metallopeptidase domain 7	NM_007402|Adam7|11500|a disintegrin and metallopeptidase domain 7	AK020312|Adam7|11500|a disintegrin and metallopeptidase domain 7
mm9_v1_chr9_-_21095328_21095652	0.686666	HOX{A4,D4}.p2	AK140808|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U20497|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	BC013898|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	U19597|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK144737|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	AK132906|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	NM_009878|Cdkn2d|12581|cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
mm9_v1_chrX_+_63902456_63902492	0.68542	HOX{A4,D4}.p2	NM_001161431|Slitrk2|245450|SLIT and NTRK-like family, member 2
mm9_v1_chr9_+_72122705_72122721	0.685249	HOX{A4,D4}.p2	NM_146224|Zfp280d|235469|zinc finger protein 280D	AK169622|Zfp280d|235469|zinc finger protein 280D	AK172652|Zfp280d|235469|zinc finger protein 280D	AK083266|Zfp280d|235469|zinc finger protein 280D
mm9_v1_chr7_-_38554642_38554770	0.674829	HOX{A4,D4}.p2	AK122270|Zfp536|243937|zinc finger protein 536	AK030633|Zfp536|243937|zinc finger protein 536	NM_172385|Zfp536|243937|zinc finger protein 536
mm9_v1_chr6_-_71212223_71212274	0.673058	HOX{A4,D4}.p2	AK027936|Smyd1|12180|SET and MYND domain containing 1	AK076266|Smyd1|12180|SET and MYND domain containing 1	AK142153|Smyd1|12180|SET and MYND domain containing 1	U76373|Smyd1|12180|SET and MYND domain containing 1	U76374|Smyd1|12180|SET and MYND domain containing 1	AK142252|Smyd1|12180|SET and MYND domain containing 1	BC076601|Smyd1|12180|SET and MYND domain containing 1	NM_001160127|Smyd1|12180|SET and MYND domain containing 1	NM_009762|Smyd1|12180|SET and MYND domain containing 1
mm9_v1_chr7_+_98239427_98239516	0.671245	HOX{A4,D4}.p2	AF388675|Dlg2|23859|discs, large homolog 2 (Drosophila)
mm9_v1_chr16_-_4523051_4523052	0.663849	HOX{A4,D4}.p2	AB113383|Srl|106393|sarcalumenin	NM_175347|Srl|106393|sarcalumenin
mm9_v1_chr5_-_99681835_99681949	0.658692	HOX{A4,D4}.p2	AK028756|Rasgef1b|320292|RasGEF domain family, member 1B	BC052726|Rasgef1b|320292|RasGEF domain family, member 1B	AK090085|Rasgef1b|320292|RasGEF domain family, member 1B	AK149812|Rasgef1b|320292|RasGEF domain family, member 1B	AY129963|Rasgef1b|320292|RasGEF domain family, member 1B	BC050858|Rasgef1b|320292|RasGEF domain family, member 1B	NM_145839|Rasgef1b|320292|RasGEF domain family, member 1B	NM_181318|Rasgef1b|320292|RasGEF domain family, member 1B
mm9_v1_chr6_+_78355148_78355151	0.65842	HOX{A4,D4}.p2	NM_009043|Reg2|19693|regenerating islet-derived 2	AK008196|Reg2|19693|regenerating islet-derived 2
mm9_v1_chr7_-_125832234_125832286	0.658416	HOX{A4,D4}.p2	
mm9_v1_chrX_+_70310125_70310125	0.655436	HOX{A4,D4}.p2	NM_153169|Pnma3|245468|paraneoplastic antigen MA3
mm9_v1_chr11_+_75578548_75578573	0.652635	HOX{A4,D4}.p2	AK204716|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	AK199717|Ywhae|22627|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm9_v1_chrX_+_7944103_7944212	0.652475	HOX{A4,D4}.p2	AY244800|Ssxb9|387131|synovial sarcoma, X member B, breakpoint 9	NM_199066|Ssxb9|387131|synovial sarcoma, X member B, breakpoint 9	BC145782|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1	BC145784|Ssxb1|67985|synovial sarcoma, X member B, breakpoint 1
mm9_v1_chr10_+_59764681_59764775	0.651285	HOX{A4,D4}.p2	AK177739|Psap|19156|prosaposin	AK184913|Psap|19156|prosaposin	AK186657|Psap|19156|prosaposin	AK200316|Psap|19156|prosaposin	AK200829|Psap|19156|prosaposin	AK206879|Psap|19156|prosaposin	AK209964|Psap|19156|prosaposin	AK212335|Psap|19156|prosaposin	AK218028|Psap|19156|prosaposin	AK193227|Psap|19156|prosaposin	AK194685|Psap|19156|prosaposin
mm9_v1_chr17_+_18107421_18107421	0.649157	HOX{A4,D4}.p2	NM_008042|Fpr3|14294|formyl peptide receptor 3
mm9_v1_chr2_-_155755998_155756045	0.640006	HOX{A4,D4}.p2	BC050884|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	BC057570|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	AK139488|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)	NM_018888|Uqcc|56046|ubiquinol-cytochrome c reductase complex chaperone, CBP3 homolog (yeast)
mm9_v1_chr9_+_86910371_86910467	0.639476	HOX{A4,D4}.p2	AB212223|Ripply2|382089|ripply2 homolog (zebrafish)	NM_001037907|Ripply2|382089|ripply2 homolog (zebrafish)	AK081203|Ripply2|382089|ripply2 homolog (zebrafish)
mm9_v1_chr15_+_101097276_101097334	0.639128	HOX{A4,D4}.p2	AK157203|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	NM_010444|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	AK004709|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	J04113|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	BC004770|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1	X60132|Nr4a1|15370|nuclear receptor subfamily 4, group A, member 1
mm9_v1_chr8_-_89996474_89996540	0.63771	HOX{A4,D4}.p2	AK158818|Cbln1|12404|cerebellin 1 precursor protein	NM_019626|Cbln1|12404|cerebellin 1 precursor protein	AK158885|Cbln1|12404|cerebellin 1 precursor protein
mm9_v1_chr7_-_54444724_54444785	0.636494	HOX{A4,D4}.p2	NM_205821|Mrgpra6|381886|MAS-related GPR, member A6	BC132198|Mrgpra6|381886|MAS-related GPR, member A6	BC132204|Mrgpra6|381886|MAS-related GPR, member A6
mm9_v1_chr2_+_172073991_172073998	0.634329	HOX{A4,D4}.p2	AK038677|Mc3r|17201|melanocortin 3 receptor	NM_008561|Mc3r|17201|melanocortin 3 receptor	BC103669|Mc3r|17201|melanocortin 3 receptor	BC104730|Mc3r|17201|melanocortin 3 receptor	BC105667|Mc3r|17201|melanocortin 3 receptor	BC105668|Mc3r|17201|melanocortin 3 receptor
mm9_v1_chr5_+_89956453_89956453	0.634164	HOX{A4,D4}.p2	AK050939|Npffr2|104443|neuropeptide FF receptor 2	NM_133192|Npffr2|104443|neuropeptide FF receptor 2
mm9_v1_chr9_+_109719158_109719169	0.634149	HOX{A4,D4}.p2	AK021276|Spink8|78709|serine peptidase inhibitor, Kazal type 8	DQ437329|Spink8|78709|serine peptidase inhibitor, Kazal type 8
mm9_v1_chr4_+_133871031_133871138	0.633782	HOX{A4,D4}.p2	NM_001039048|Trim63|433766|tripartite motif-containing 63	BC147663|Trim63|433766|tripartite motif-containing 63	BC147666|Trim63|433766|tripartite motif-containing 63	AK052911|Trim63|433766|tripartite motif-containing 63	DQ229108|Trim63|433766|tripartite motif-containing 63
mm9_v1_chrX_-_8038851_8038851	0.618821	HOX{A4,D4}.p2	AK076879|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	AY244793|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	BC048441|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	BC089478|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	NM_001001450|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2	NM_001134226|Ssxb2|387132|synovial sarcoma, X member B, breakpoint 2
mm9_v1_chr14_+_66915903_66915912	0.617389	HOX{A4,D4}.p2	AK031803|Trim35|66854|tripartite motif-containing 35	BC049105|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr1_-_132625829_132625829	0.613627	HOX{A4,D4}.p2	AK029659|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	NM_001162415|Pfkfb2|18640|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
mm9_v1_chr9_-_39764653_39764653	0.609772	HOX{A4,D4}.p2	BC119350|Olfr976|258364|olfactory receptor 976	BC120621|Olfr976|258364|olfactory receptor 976	NM_146367|Olfr976|258364|olfactory receptor 976
mm9_v1_chr2_-_25070107_25070150	0.608888	HOX{A4,D4}.p2	AK029738|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	BC132286|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	BC138006|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	NM_028961|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene	AK017033|4933433C11Rik|74472|RIKEN cDNA 4933433C11 gene
mm9_v1_chr17_-_85463965_85464074	0.60844	HOX{A4,D4}.p2	
mm9_v1_chr11_-_69615126_69615217	0.607632	HOX{A4,D4}.p2	NM_010198|Fgf11|14166|fibroblast growth factor 11	U66203|Fgf11|14166|fibroblast growth factor 11	BC066859|Fgf11|14166|fibroblast growth factor 11
mm9_v1_chr10_+_56097078_56097350	0.607329	HOX{A4,D4}.p2	AY427554|Gja1|14609|gap junction protein, alpha 1	AY427555|Gja1|14609|gap junction protein, alpha 1	NM_010288|Gja1|14609|gap junction protein, alpha 1	M63801|Gja1|14609|gap junction protein, alpha 1	AK011459|Gja1|14609|gap junction protein, alpha 1	AK036979|Gja1|14609|gap junction protein, alpha 1	AK145692|Gja1|14609|gap junction protein, alpha 1	AK161997|Gja1|14609|gap junction protein, alpha 1	AK171955|Gja1|14609|gap junction protein, alpha 1	AY427560|Gja1|14609|gap junction protein, alpha 1	BC006894|Gja1|14609|gap junction protein, alpha 1	BC055375|Gja1|14609|gap junction protein, alpha 1	AK029291|Gja1|14609|gap junction protein, alpha 1	AK165986|Gja1|14609|gap junction protein, alpha 1	X61576|Gja1|14609|gap junction protein, alpha 1	AY427556|Gja1|14609|gap junction protein, alpha 1	AY427557|Gja1|14609|gap junction protein, alpha 1	AY427558|Gja1|14609|gap junction protein, alpha 1
mm9_v1_chr3_+_88168495_88168520	0.607033	HOX{A4,D4}.p2	AK139144|Paqr6|68957|progestin and adipoQ receptor family member VI	AY424295|Paqr6|68957|progestin and adipoQ receptor family member VI	NM_198410|Paqr6|68957|progestin and adipoQ receptor family member VI
mm9_v1_chr12_+_100009231_100009268	0.606913	HOX{A4,D4}.p2	NM_001160108|Zc3h14|75553|zinc finger CCCH type containing 14	AK006009|Zc3h14|75553|zinc finger CCCH type containing 14
mm9_v1_chr7_+_16481472_16481519	0.603688	HOX{A4,D4}.p2	AK145701|Crxos1|546024|Crx opposite strand transcript 1	NM_001033638|Crxos1|546024|Crx opposite strand transcript 1	AB472692|Crxos1|546024|Crx opposite strand transcript 1	AB472693|Crxos1|546024|Crx opposite strand transcript 1	AY593966|Crxos1|546024|Crx opposite strand transcript 1
mm9_v1_chr5_+_88408469_88408475	0.602058	HOX{A4,D4}.p2	AK016441|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	AK076636|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	BC049750|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene	NM_027631|4931407G18Rik|70977|RIKEN cDNA 4931407G18 gene
mm9_v1_chr4_+_43460181_43460289	0.601938	HOX{A4,D4}.p2	
mm9_v1_chr11_-_100355280_100355392	0.600257	HOX{A4,D4}.p2	AK136812|Acly|104112|ATP citrate lyase	AK043434|Acly|104112|ATP citrate lyase
mm9_v1_chr7_-_27944870_27944933	0.599588	HOX{A4,D4}.p2	AK179611|Egln2|112406|EGL nine homolog 2 (C. elegans)
mm9_v1_chr1_-_173152634_173152646	0.599544	HOX{A4,D4}.p2	AK028388|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)	NM_001037170|Tomm40l|641376|translocase of outer mitochondrial membrane 40 homolog-like (yeast)
mm9_v1_chr2_+_120967876_120967876	0.598185	HOX{A4,D4}.p2	BC050879|Adal|75894|adenosine deaminase-like	BC052048|Adal|75894|adenosine deaminase-like	NM_029475|Adal|75894|adenosine deaminase-like
mm9_v1_chr9_-_36954858_36954932	0.596331	HOX{A4,D4}.p2	NM_148950|Pknox2|208076|Pbx/knotted 1 homeobox 2
mm9_v1_chrX_-_49034778_49034778	0.595109	HOX{A4,D4}.p2	NM_001077202|Hs6st2|50786|heparan sulfate 6-O-sulfotransferase 2
mm9_v1_chr1_+_6720153_6720223	0.593977	HOX{A4,D4}.p2	AK133743|St18|240690|suppression of tumorigenicity 18	BC118528|St18|240690|suppression of tumorigenicity 18	AK137440|St18|240690|suppression of tumorigenicity 18	AK141513|St18|240690|suppression of tumorigenicity 18
mm9_v1_chr11_+_93905443_93905464	0.592997	HOX{A4,D4}.p2	AK147537|Spag9|70834|sperm associated antigen 9	AK147431|Spag9|70834|sperm associated antigen 9
mm9_v1_chr11_-_59005394_59005458	0.592715	HOX{A4,D4}.p2	NM_008193|Guk1|14923|guanylate kinase 1
mm9_v1_chrX_+_8640215_8640215	0.591389	HOX{A4,D4}.p2	BC104362|Gm5635|434729|predicted gene 5635	NM_001038697|Gm5635|434729|predicted gene 5635
mm9_v1_chrX_-_7709452_7709736	0.586247	HOX{A4,D4}.p2	AF513713|Wdr13|73447|WD repeat domain 13	BC125287|Wdr13|73447|WD repeat domain 13	BC120553|Wdr13|73447|WD repeat domain 13	AK017549|Wdr13|73447|WD repeat domain 13	AF353243|Wdr13|73447|WD repeat domain 13	BC037502|Wdr13|73447|WD repeat domain 13	BC108332|Wdr13|73447|WD repeat domain 13
mm9_v1_chr16_+_4741612_4741615	0.585354	HOX{A4,D4}.p2	AF054669|Hmox2|15369|heme oxygenase (decycling) 2	NM_010443|Hmox2|15369|heme oxygenase (decycling) 2	AF029874|Hmox2|15369|heme oxygenase (decycling) 2
mm9_v1_chr18_+_67503217_67503450	0.584102	HOX{A4,D4}.p2	NM_007702|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	AF041376|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	BC096649|Cidea|12683|cell death-inducing DNA fragmentation factor, alpha subunit-like effector A
mm9_v1_chr13_-_49404519_49404608	0.582726	HOX{A4,D4}.p2	AK157835|Fgd3|30938|FYVE, RhoGEF and PH domain containing 3	NM_015759|Fgd3|30938|FYVE, RhoGEF and PH domain containing 3	AF017369|Fgd3|30938|FYVE, RhoGEF and PH domain containing 3
mm9_v1_chr15_+_31498611_31498674	0.582309	HOX{A4,D4}.p2	BC024580|Cmbl|69574|carboxymethylenebutenolidase-like (Pseudomonas)	NM_181588|Cmbl|69574|carboxymethylenebutenolidase-like (Pseudomonas)
mm9_v1_chr10_-_36855292_36855411	0.58228	HOX{A4,D4}.p2	AK082623|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK136452|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr8_-_44613490_44613490	0.577449	HOX{A4,D4}.p2	AK015931|Adam26b|382007|a disintegrin and metallopeptidase domain 26B	NM_001009547|Adam26b|382007|a disintegrin and metallopeptidase domain 26B
mm9_v1_chr1_+_5073161_5073324	0.57669	HOX{A4,D4}.p2	AK151659|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK034165|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK135137|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK152147|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK081492|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	BC009154|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	AK078767|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H	NM_133826|Atp6v1h|108664|ATPase, H+ transporting, lysosomal V1 subunit H
mm9_v1_chrX_-_132162243_132162243	0.576052	HOX{A4,D4}.p2	AK015971|Prame|75829|preferentially expressed antigen in melanoma	NM_029459|Prame|75829|preferentially expressed antigen in melanoma
mm9_v1_chr3_+_32468408_32468474	0.575219	HOX{A4,D4}.p2	BC002133|Mfn1|67414|mitofusin 1	AK009490|Mfn1|67414|mitofusin 1
mm9_v1_chr16_+_43247396_43247452	0.574272	HOX{A4,D4}.p2	AK005028|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_019778|Zbtb20|56490|zinc finger and BTB domain containing 20	NM_181058|Zbtb20|56490|zinc finger and BTB domain containing 20	BC031114|Zbtb20|56490|zinc finger and BTB domain containing 20
mm9_v1_chr14_+_122433895_122433895	0.573315	HOX{A4,D4}.p2	BC099499|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)	NM_001037744|Timm8a2|223262|translocase of inner mitochondrial membrane 8 homolog a2 (yeast)
mm9_v1_chr1_+_166205728_166205836	0.573269	HOX{A4,D4}.p2	BC060044|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	NM_029115|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK076640|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK149168|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	AK015464|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene	BC048086|4930455F23Rik|74895|RIKEN cDNA 4930455F23 gene
mm9_v1_chr9_-_121767026_121767117	0.572999	HOX{A4,D4}.p2	NM_019814|Higd1a|56295|HIG1 domain family, member 1A
mm9_v1_chr5_-_138181225_138181225	0.570253	HOX{A4,D4}.p2	AB429289|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	BC057372|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene	NM_175521|6430598A04Rik|243300|RIKEN cDNA 6430598A04 gene
mm9_v1_chrX_+_45976982_45977308	0.565571	HOX{A4,D4}.p2	NM_001166450|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	BC048692|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155812|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14	AF155813|Slc25a14|20523|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm9_v1_chr6_+_143156520_143156614	0.564364	HOX{A4,D4}.p2	AK004338|Etnk1|75320|ethanolamine kinase 1
mm9_v1_chr6_+_54251485_54251608	0.563155	HOX{A4,D4}.p2	
mm9_v1_chr17_-_37088436_37088450	0.562116	HOX{A4,D4}.p2	EF528576|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr14_+_47451869_47451942	0.561482	HOX{A4,D4}.p2	AK004156|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK007402|Cgrrf1|68755|cell growth regulator with ring finger domain 1	BC037677|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK030403|Cgrrf1|68755|cell growth regulator with ring finger domain 1	AK030755|Cgrrf1|68755|cell growth regulator with ring finger domain 1	NM_026832|Cgrrf1|68755|cell growth regulator with ring finger domain 1
mm9_v1_chr14_+_66915902_66915902	0.560887	HOX{A4,D4}.p2	AK003000|Trim35|66854|tripartite motif-containing 35	AK020775|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr9_+_113721698_113721717	0.558421	HOX{A4,D4}.p2	AK043551|Clasp2|76499|CLIP associating protein 2	AK148966|Clasp2|76499|CLIP associating protein 2	AK164326|Clasp2|76499|CLIP associating protein 2	NM_001081960|Clasp2|76499|CLIP associating protein 2	NM_029633|Clasp2|76499|CLIP associating protein 2	BC117963|Clasp2|76499|CLIP associating protein 2	BC117964|Clasp2|76499|CLIP associating protein 2	BC131791|Clasp2|76499|CLIP associating protein 2	BC131792|Clasp2|76499|CLIP associating protein 2	BC141415|Clasp2|76499|CLIP associating protein 2
mm9_v1_chr5_-_92483744_92484066	0.557338	HOX{A4,D4}.p2	AK169571|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2	AK220349|G3bp2|23881|GTPase activating protein (SH3 domain) binding protein 2
mm9_v1_chr6_+_18816317_18816373	0.55683	HOX{A4,D4}.p2	BC049731|Ankrd7|75196|ankyrin repeat domain 7	NM_001167757|Ankrd7|75196|ankyrin repeat domain 7	NM_029202|Ankrd7|75196|ankyrin repeat domain 7	AK077080|Ankrd7|75196|ankyrin repeat domain 7	AK015948|Ankrd7|75196|ankyrin repeat domain 7
mm9_v1_chr4_+_34841027_34841057	0.551797	HOX{A4,D4}.p2	NM_009889|Cga|12640|glycoprotein hormones, alpha subunit	BC087926|Cga|12640|glycoprotein hormones, alpha subunit	J00643|Cga|12640|glycoprotein hormones, alpha subunit
mm9_v1_chr15_+_92427539_92427556	0.550163	HOX{A4,D4}.p2	NM_001164594|Pdzrn4|239618|PDZ domain containing RING finger 4	AK135524|Pdzrn4|239618|PDZ domain containing RING finger 4
mm9_v1_chr18_-_60432920_60432925	0.549322	HOX{A4,D4}.p2	BC150900|Gm4841|225594|predicted gene 4841	NM_001034859|Gm4841|225594|predicted gene 4841	AK156469|Gm4841|225594|predicted gene 4841
mm9_v1_chr6_+_28377788_28377900	0.543977	HOX{A4,D4}.p2	AF176024|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)	BC050759|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)	NM_019569|Fscn3|56223|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)
mm9_v1_chr9_+_72859850_72859978	0.542739	HOX{A4,D4}.p2	BC006717|Ccpg1|72278|cell cycle progression 1
mm9_v1_chr14_-_21487489_21487549	0.541411	HOX{A4,D4}.p2	BC137972|Synpo2l|68760|synaptopodin 2-like	BC145070|Synpo2l|68760|synaptopodin 2-like	AK053054|Synpo2l|68760|synaptopodin 2-like	NM_175132|Synpo2l|68760|synaptopodin 2-like
mm9_v1_chr10_+_25079661_25079716	0.541233	HOX{A4,D4}.p2	AK170275|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK167434|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	BC023768|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2	AK052475|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr9_+_14305055_14305063	0.541121	HOX{A4,D4}.p2	NM_023153|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr11_+_29641691_29641734	0.540636	HOX{A4,D4}.p2	AK003859|Rtn4|68585|reticulon 4
mm9_v1_chr16_-_10788722_10788752	0.540174	HOX{A4,D4}.p2	J03494|Tnp2|21959|transition protein 2	BC092529|Tnp2|21959|transition protein 2	NM_013694|Tnp2|21959|transition protein 2	AK005689|Tnp2|21959|transition protein 2
mm9_v1_chr7_-_93924317_93924373	0.536939	HOX{A4,D4}.p2	BC119604|Folh1|53320|folate hydrolase	BC119605|Folh1|53320|folate hydrolase	AK002920|Folh1|53320|folate hydrolase	AF026380|Folh1|53320|folate hydrolase	AK090289|Folh1|53320|folate hydrolase	NM_001159706|Folh1|53320|folate hydrolase	NM_016770|Folh1|53320|folate hydrolase
mm9_v1_chr11_+_68933954_68933975	0.536733	HOX{A4,D4}.p2	AK050791|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	BC134378|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	NM_033041|Hes7|84653|hairy and enhancer of split 7 (Drosophila)	AB049065|Hes7|84653|hairy and enhancer of split 7 (Drosophila)
mm9_v1_chr19_-_47165086_47165134	0.529811	HOX{A4,D4}.p2	AK008345|Usmg5|66477|upregulated during skeletal muscle growth 5	BC087919|Usmg5|66477|upregulated during skeletal muscle growth 5	NM_023211|Usmg5|66477|upregulated during skeletal muscle growth 5	AK038457|Usmg5|66477|upregulated during skeletal muscle growth 5	AJ290947|Usmg5|66477|upregulated during skeletal muscle growth 5	AK088856|Usmg5|66477|upregulated during skeletal muscle growth 5
mm9_v1_chr17_+_71554015_71554025	0.529271	HOX{A4,D4}.p2	BC039698|Lpin2|64898|lipin 2
mm9_v1_chr7_-_5364746_5364746	0.524586	HOX{A4,D4}.p2	AF324869|Vmn1r58|81014|vomeronasal 1 receptor 58	NM_030739|Vmn1r58|81014|vomeronasal 1 receptor 58
mm9_v1_chr19_-_47044056_47044056	0.521797	HOX{A4,D4}.p2	NM_001164365|Nt5c2|76952|5'-nucleotidase, cytosolic II
mm9_v1_chr8_+_107800316_107800347	0.521621	HOX{A4,D4}.p2	AK079536|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	BC027290|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AY459322|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	AK053846|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)	NM_030152|Nol3|78688|nucleolar protein 3 (apoptosis repressor with CARD domain)
mm9_v1_chrX_+_7904549_7904577	0.520123	HOX{A4,D4}.p2	AY244801|Ssxb10|385312|synovial sarcoma, X member B, breakpoint 10	NM_199064|Ssxb10|385312|synovial sarcoma, X member B, breakpoint 10	BC145539|Ssxb10|385312|synovial sarcoma, X member B, breakpoint 10
mm9_v1_chr17_+_7529015_7529217	0.520084	HOX{A4,D4}.p2	X58170|Tcp10c|21462|t-complex protein 10c	AK161455|Tcp10b|21461|t-complex protein 10b	BC052353|Tcp10b|21461|t-complex protein 10b	NM_011553|Tcp10b|21461|t-complex protein 10b	NM_009340|Tcp10a|21460|t-complex protein 10a	X58169|Tcp10a|21460|t-complex protein 10a	M22598|Tcp10c|21462|t-complex protein 10c
mm9_v1_chr18_-_33623668_33623692	0.518971	HOX{A4,D4}.p2	NM_001109988|D0H4S114|27528|DNA segment, human D4S114
mm9_v1_chr4_-_14723198_14723206	0.518345	HOX{A4,D4}.p2	AK161371|Lrrc69|73314|leucine rich repeat containing 69	NM_028499|Lrrc69|73314|leucine rich repeat containing 69	AK006601|Lrrc69|73314|leucine rich repeat containing 69
mm9_v1_chr10_-_127188724_127188780	0.517116	HOX{A4,D4}.p2	BC125279|Gpr182|11536|G protein-coupled receptor 182	D17292|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr4_-_109125244_109125254	0.514842	HOX{A4,D4}.p2	AK139182|Rnf11|29864|ring finger protein 11
mm9_v1_chr17_-_45797425_45797512	0.511473	HOX{A4,D4}.p2	AK216465|Tmem63b|224807|transmembrane protein 63b
mm9_v1_chr14_-_8826504_8826661	0.507491	HOX{A4,D4}.p2	U76110|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK156109|Dnase1l3|13421|deoxyribonuclease 1-like 3	AK171843|Dnase1l3|13421|deoxyribonuclease 1-like 3	BC012671|Dnase1l3|13421|deoxyribonuclease 1-like 3	AF047355|Dnase1l3|13421|deoxyribonuclease 1-like 3
mm9_v1_chr10_+_33577526_33577529	0.506939	HOX{A4,D4}.p2	AF026075|Sult3a1|57430|sulfotransferase family 3A, member 1	BC125593|Sult3a1|57430|sulfotransferase family 3A, member 1	BC125595|Sult3a1|57430|sulfotransferase family 3A, member 1	NM_020565|Sult3a1|57430|sulfotransferase family 3A, member 1
mm9_v1_chr16_+_36221553_36221647	0.505633	HOX{A4,D4}.p2	AK008122|2010005H15Rik|76770|RIKEN cDNA 2010005H15 gene	BC125396|2010005H15Rik|76770|RIKEN cDNA 2010005H15 gene	BC125422|2010005H15Rik|76770|RIKEN cDNA 2010005H15 gene	BC145264|2010005H15Rik|76770|RIKEN cDNA 2010005H15 gene	NM_029733|2010005H15Rik|76770|RIKEN cDNA 2010005H15 gene
mm9_v1_chr10_+_81091284_81091284	0.502752	HOX{A4,D4}.p2	NM_027480|Ankrd24|70615|ankyrin repeat domain 24
mm9_v1_chr18_-_15222079_15222098	0.501306	HOX{A4,D4}.p2	NM_001142731|Kctd1|106931|potassium channel tetramerisation domain containing 1
mm9_v1_chr2_-_91802081_91802083	0.500187	HOX{A4,D4}.p2	
mm9_v1_chr3_+_88769733_88769733	0.499078	HOX{A4,D4}.p2	NM_138679|Ash1l|192195|ash1 (absent, small, or homeotic)-like (Drosophila)
mm9_v1_chr8_-_98412271_98412300	0.497518	HOX{A4,D4}.p2	AK098166|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK167767|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	BC089015|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK155075|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK149886|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK149926|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK136556|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial	AK152921|Got2|14719|glutamate oxaloacetate transaminase 2, mitochondrial
mm9_v1_chr6_+_106068758_106068758	0.496337	HOX{A4,D4}.p2	AK043507|Cntn4|269784|contactin 4	NM_001109751|Cntn4|269784|contactin 4
mm9_v1_chr15_-_97996008_97996055	0.492184	HOX{A4,D4}.p2	NM_001170711|Asb8|78541|ankyrin repeat and SOCS box-containing 8	AK016001|Asb8|78541|ankyrin repeat and SOCS box-containing 8
mm9_v1_chr7_+_52661329_52661329	0.491251	HOX{A4,D4}.p2	NM_010596|Kcna7|16495|potassium voltage-gated channel, shaker-related subfamily, member 7
mm9_v1_chr7_+_28345494_28345525	0.489172	HOX{A4,D4}.p2	AK077369|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	NM_001122767|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009941|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK140814|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene	AK009456|2310022A10Rik|66367|RIKEN cDNA 2310022A10 gene
mm9_v1_chr10_+_73284612_73284690	0.48399	HOX{A4,D4}.p2	NM_001142735|Pcdh15|11994|protocadherin 15	NM_001142736|Pcdh15|11994|protocadherin 15	NM_001142737|Pcdh15|11994|protocadherin 15	NM_001142738|Pcdh15|11994|protocadherin 15	NM_001142739|Pcdh15|11994|protocadherin 15	NM_001142740|Pcdh15|11994|protocadherin 15	NM_001142741|Pcdh15|11994|protocadherin 15	NM_001142742|Pcdh15|11994|protocadherin 15	NM_001142743|Pcdh15|11994|protocadherin 15	NM_001142746|Pcdh15|11994|protocadherin 15	NM_001142747|Pcdh15|11994|protocadherin 15	NM_001142748|Pcdh15|11994|protocadherin 15	NM_001142760|Pcdh15|11994|protocadherin 15	NM_023115|Pcdh15|11994|protocadherin 15	AF281899|Pcdh15|11994|protocadherin 15	AY949849|Pcdh15|11994|protocadherin 15	DQ354396|Pcdh15|11994|protocadherin 15	DQ354397|Pcdh15|11994|protocadherin 15	DQ354398|Pcdh15|11994|protocadherin 15	DQ354399|Pcdh15|11994|protocadherin 15	DQ354400|Pcdh15|11994|protocadherin 15	DQ354401|Pcdh15|11994|protocadherin 15	DQ354402|Pcdh15|11994|protocadherin 15	DQ354403|Pcdh15|11994|protocadherin 15	DQ354404|Pcdh15|11994|protocadherin 15	DQ354405|Pcdh15|11994|protocadherin 15	DQ354406|Pcdh15|11994|protocadherin 15	DQ354407|Pcdh15|11994|protocadherin 15	DQ354408|Pcdh15|11994|protocadherin 15	DQ354409|Pcdh15|11994|protocadherin 15	DQ354410|Pcdh15|11994|protocadherin 15	DQ354411|Pcdh15|11994|protocadherin 15	DQ354412|Pcdh15|11994|protocadherin 15	DQ354413|Pcdh15|11994|protocadherin 15	DQ354414|Pcdh15|11994|protocadherin 15	DQ354415|Pcdh15|11994|protocadherin 15	AK139154|Pcdh15|11994|protocadherin 15	DQ354416|Pcdh15|11994|protocadherin 15	DQ354417|Pcdh15|11994|protocadherin 15	DQ354418|Pcdh15|11994|protocadherin 15
mm9_v1_chr5_+_136259172_136259218	0.480065	HOX{A4,D4}.p2	DQ402950|Mdh2|17448|malate dehydrogenase 2, NAD (mitochondrial)
mm9_v1_chr14_+_79826199_79826317	0.479954	HOX{A4,D4}.p2	AK135854|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	BC096019|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7	NM_001024135|Kbtbd7|211255|kelch repeat and BTB (POZ) domain containing 7
mm9_v1_chr6_-_142421335_142421382	0.477091	HOX{A4,D4}.p2	AK138992|Gys2|232493|glycogen synthase 2	AK149391|Gys2|232493|glycogen synthase 2
mm9_v1_chr4_+_102243272_102243317	0.474629	HOX{A4,D4}.p2	AK011999|Pde4b|18578|phosphodiesterase 4B, cAMP specific	BC007155|Pde4b|18578|phosphodiesterase 4B, cAMP specific
mm9_v1_chr10_+_59765201_59765253	0.473755	HOX{A4,D4}.p2	
mm9_v1_chr4_-_91813911_91813924	0.47254	HOX{A4,D4}.p2	BC099579|Izumo3|69314|IZUMO family member 3	NM_027034|Izumo3|69314|IZUMO family member 3	AK005867|Izumo3|69314|IZUMO family member 3
mm9_v1_chr16_-_38445988_38446143	0.469123	HOX{A4,D4}.p2	AK003751|Adprh|11544|ADP-ribosylarginine hydrolase
mm9_v1_chr7_-_15078274_15078316	0.469083	HOX{A4,D4}.p2	NM_001184981|Sult2a7|638251|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7
mm9_v1_chr13_-_58456221_58456222	0.468342	HOX{A4,D4}.p2	BC116646|Kif27|75050|kinesin family member 27	NM_175214|Kif27|75050|kinesin family member 27
mm9_v1_chr2_+_173348092_173348148	0.468162	HOX{A4,D4}.p2	NM_028158|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	BC050790|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene	AK006200|1700021F07Rik|72221|RIKEN cDNA 1700021F07 gene
mm9_v1_chrX_+_69062091_69062188	0.467692	HOX{A4,D4}.p2	NM_001081356|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049488|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK138582|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK011632|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK008848|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK045401|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK164163|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AJ748652|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC094639|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	AK049296|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	BC028317|Vma21|67048|VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
mm9_v1_chr11_+_23978110_23978267	0.46722	HOX{A4,D4}.p2	AK140949|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF051525|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169036|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF169037|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK122557|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AF186018|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK004395|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	AK043677|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)	BC051418|Bcl11a|14025|B-cell CLL/lymphoma 11A (zinc finger protein)
mm9_v1_chrX_-_156560678_156560850	0.465371	HOX{A4,D4}.p2	AL355693|Pdha1|18597|pyruvate dehydrogenase E1 alpha 1
mm9_v1_chr2_-_91476551_91476600	0.463872	HOX{A4,D4}.p2	AK050056|F2|14061|coagulation factor II	AK167532|F2|14061|coagulation factor II	AK149367|F2|14061|coagulation factor II	BC013662|F2|14061|coagulation factor II	NM_010168|F2|14061|coagulation factor II	X52308|F2|14061|coagulation factor II
mm9_v1_chr17_+_13547437_13547493	0.463578	HOX{A4,D4}.p2	AK132653|Gm9880|100041352|predicted gene 9880	NM_001167578|Gm9880|100041352|predicted gene 9880	BC061173|Gm9880|100041352|predicted gene 9880	AK076614|Gm9880|100041352|predicted gene 9880
mm9_v1_chr14_+_28051224_28051247	0.462427	HOX{A4,D4}.p2	AK004600|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	NM_027871|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036737|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3	AK036749|Arhgef3|71704|Rho guanine nucleotide exchange factor (GEF) 3
mm9_v1_chr6_+_88674697_88674748	0.462127	HOX{A4,D4}.p2	NM_001166250|Mgll|23945|monoglyceride lipase	NM_001166251|Mgll|23945|monoglyceride lipase	AK006949|Mgll|23945|monoglyceride lipase
mm9_v1_chr13_+_113254277_113254381	0.461841	HOX{A4,D4}.p2	NM_010560|Il6st|16195|interleukin 6 signal transducer	BC058679|Il6st|16195|interleukin 6 signal transducer	AK170020|Il6st|16195|interleukin 6 signal transducer	BC020454|Il6st|16195|interleukin 6 signal transducer
mm9_v1_chr7_+_31483944_31483970	0.457977	HOX{A4,D4}.p2	BC048568|2200002J24Rik|69147|RIKEN cDNA 2200002J24 gene	NM_026961|2200002J24Rik|69147|RIKEN cDNA 2200002J24 gene	AK008620|2200002J24Rik|69147|RIKEN cDNA 2200002J24 gene
mm9_v1_chr1_-_174825067_174825072	0.457719	HOX{A4,D4}.p2	AK144248|Apcs|20219|serum amyloid P-component	AK165699|Apcs|20219|serum amyloid P-component
mm9_v1_chr17_+_18024787_18024817	0.456566	HOX{A4,D4}.p2	AK054286|Fpr2|14289|formyl peptide receptor 2	NM_008039|Fpr2|14289|formyl peptide receptor 2	U78299|Fpr3|14294|formyl peptide receptor 3
mm9_v1_chr7_-_36539369_36539472	0.455605	HOX{A4,D4}.p2	BC059897|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK045758|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031722|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	BC050065|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK033395|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AF538322|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK031345|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	AK034217|Dpy19l3|233115|dpy-19-like 3 (C. elegans)	NM_178704|Dpy19l3|233115|dpy-19-like 3 (C. elegans)
mm9_v1_chr1_-_87495323_87495391	0.453117	HOX{A4,D4}.p2	AK019873|Sp110|109032|Sp110 nuclear body protein	AK150373|Sp110|109032|Sp110 nuclear body protein	BC099598|Sp110|109032|Sp110 nuclear body protein	AK077800|Sp110|109032|Sp110 nuclear body protein	BC094500|Sp110|109032|Sp110 nuclear body protein	BC018413|Sp110|109032|Sp110 nuclear body protein	BC035444|Sp110|109032|Sp110 nuclear body protein	BC039938|Sp110|109032|Sp110 nuclear body protein	AY845948|Sp110|109032|Sp110 nuclear body protein
mm9_v1_chr5_-_139960341_139960349	0.452042	HOX{A4,D4}.p2	AF224494|Zfand2a|100494|zinc finger, AN1-type domain 2A
mm9_v1_chr9_-_53514219_53514352	0.451439	HOX{A4,D4}.p2	AB232635|Rab39|270160|RAB39, member RAS oncogene family	BC049787|Rab39|270160|RAB39, member RAS oncogene family	AK053487|Rab39|270160|RAB39, member RAS oncogene family	AK049038|Rab39|270160|RAB39, member RAS oncogene family	NM_175562|Rab39|270160|RAB39, member RAS oncogene family
mm9_v1_chr3_+_81736518_81736645	0.451142	HOX{A4,D4}.p2	AK143683|Ctso|229445|cathepsin O	AK034490|Ctso|229445|cathepsin O	NM_177662|Ctso|229445|cathepsin O	AK020735|Ctso|229445|cathepsin O	AK040071|Ctso|229445|cathepsin O	AK049470|Ctso|229445|cathepsin O	AK166103|Ctso|229445|cathepsin O	BC098219|Ctso|229445|cathepsin O	AK165930|Ctso|229445|cathepsin O	BC044664|Ctso|229445|cathepsin O
mm9_v1_chr12_-_102137614_102137733	0.449562	HOX{A4,D4}.p2	AK154292|Gm10431|100038679|predicted gene 10431	NM_001177674|Gpr68|238377|G protein-coupled receptor 68
mm9_v1_chr4_+_33397279_33397404	0.448793	HOX{A4,D4}.p2	AK151463|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	NM_011884|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK150497|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160007|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK002922|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK079488|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK142016|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK160706|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	BC043657|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AK169305|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF034568|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase	AF025653|Rngtt|24018|RNA guanylyltransferase and 5'-phosphatase
mm9_v1_chr16_-_75567926_75567926	0.448324	HOX{A4,D4}.p2	AK079027|Lipi|320355|lipase, member I	NM_177142|Lipi|320355|lipase, member I
mm9_v1_chr17_-_40345499_40345553	0.447846	HOX{A4,D4}.p2	M18654|Pgk2|18663|phosphoglycerate kinase 2	BC052343|Pgk2|18663|phosphoglycerate kinase 2	AK015016|Pgk2|18663|phosphoglycerate kinase 2	AK133436|Pgk2|18663|phosphoglycerate kinase 2	BC061054|Pgk2|18663|phosphoglycerate kinase 2	NM_031190|Pgk2|18663|phosphoglycerate kinase 2
mm9_v1_chr7_-_30638635_30638689	0.447448	HOX{A4,D4}.p2	AK132317|Zfp940|233057|zinc finger protein 940	AK139326|Zfp940|233057|zinc finger protein 940	BC027344|Zfp940|233057|zinc finger protein 940	NM_173738|Zfp940|233057|zinc finger protein 940	AK137204|Zfp940|233057|zinc finger protein 940	AK141787|Zfp940|233057|zinc finger protein 940
mm9_v1_chr7_-_112478791_112478791	0.446631	HOX{A4,D4}.p2	BC137757|Olfr690|56860|olfactory receptor 690	NM_020290|Olfr690|56860|olfactory receptor 690
mm9_v1_chr4_-_33276711_33276711	0.443539	HOX{A4,D4}.p2	AK145296|Pm20d2|242377|peptidase M20 domain containing 2	NM_001034867|Pm20d2|242377|peptidase M20 domain containing 2
mm9_v1_chr14_+_66915852_66915861	0.438953	HOX{A4,D4}.p2	NM_029979|Trim35|66854|tripartite motif-containing 35
mm9_v1_chr13_-_114453813_114453883	0.435781	HOX{A4,D4}.p2	BC092376|Hspb3|56534|heat shock protein 3	AF203375|Hspb3|56534|heat shock protein 3	BC065388|Hspb3|56534|heat shock protein 3	AK009633|Hspb3|56534|heat shock protein 3	NM_019960|Hspb3|56534|heat shock protein 3
mm9_v1_chr19_+_5492584_5492667	0.435596	HOX{A4,D4}.p2	
mm9_v1_chrX_-_103414967_103414990	0.433054	HOX{A4,D4}.p2	BC066223|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor	BC051635|Taf9b|407786|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm9_v1_chr4_-_73596693_73596749	0.43135	HOX{A4,D4}.p2	BC115483|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	BC115484|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009124|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	AK009097|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027104|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene	NM_027981|2310002L09Rik|71886|RIKEN cDNA 2310002L09 gene
mm9_v1_chr1_-_174149989_174150025	0.430662	HOX{A4,D4}.p2	NM_009813|Casq1|12372|calsequestrin 1
mm9_v1_chr4_-_116228531_116228547	0.429173	HOX{A4,D4}.p2	AK041960|Tmem69|230657|transmembrane protein 69	BC106178|Tmem69|230657|transmembrane protein 69	NM_177670|Tmem69|230657|transmembrane protein 69
mm9_v1_chr9_-_117539030_117539030	0.428924	HOX{A4,D4}.p2	AK046197|Rbms3|207181|RNA binding motif, single stranded interacting protein	NM_001172121|Rbms3|207181|RNA binding motif, single stranded interacting protein
mm9_v1_chr11_+_79404517_79404662	0.427877	HOX{A4,D4}.p2	AK147344|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)	AK147219|Rab11fip4|268451|RAB11 family interacting protein 4 (class II)
mm9_v1_chr9_+_94570310_94570389	0.427476	HOX{A4,D4}.p2	NM_177909|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK037058|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC153825|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	BC099942|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK172687|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9	AK156494|Slc9a9|331004|solute carrier family 9 (sodium/hydrogen exchanger), member 9
mm9_v1_chr14_+_56194510_56194513	0.427142	HOX{A4,D4}.p2	AB054000|Fitm1|68680|fat storage-inducing transmembrane protein 1	BC104408|Fitm1|68680|fat storage-inducing transmembrane protein 1	BC104409|Fitm1|68680|fat storage-inducing transmembrane protein 1	NM_026808|Fitm1|68680|fat storage-inducing transmembrane protein 1	BC037188|Fitm1|68680|fat storage-inducing transmembrane protein 1
mm9_v1_chr6_-_40949477_40949477	0.425951	HOX{A4,D4}.p2	NM_001102660|Gm2663|100040208|predicted gene 2663
mm9_v1_chr14_-_58190396_58190409	0.425924	HOX{A4,D4}.p2	BC051925|N6amt2|68043|N-6 adenine-specific DNA methyltransferase 2 (putative)	AK005312|N6amt2|68043|N-6 adenine-specific DNA methyltransferase 2 (putative)	AK010911|N6amt2|68043|N-6 adenine-specific DNA methyltransferase 2 (putative)	AK012083|N6amt2|68043|N-6 adenine-specific DNA methyltransferase 2 (putative)	NM_026526|N6amt2|68043|N-6 adenine-specific DNA methyltransferase 2 (putative)
mm9_v1_chr2_+_136327645_136327733	0.425047	HOX{A4,D4}.p2	AK040732|BC034902|228642|cDNA sequence BC034902	BC034902|BC034902|228642|cDNA sequence BC034902
mm9_v1_chr11_+_21472279_21472320	0.423358	HOX{A4,D4}.p2	AK083042|Wdpcp|216560|WD repeat containing planar cell polarity effector	NM_145425|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK082370|Wdpcp|216560|WD repeat containing planar cell polarity effector	AK043672|Wdpcp|216560|WD repeat containing planar cell polarity effector	BC141166|Wdpcp|216560|WD repeat containing planar cell polarity effector	AF424701|Wdpcp|216560|WD repeat containing planar cell polarity effector
mm9_v1_chr2_-_170253324_170253344	0.422887	HOX{A4,D4}.p2	BC113166|Bcas1|76960|breast carcinoma amplified sequence 1	BC113957|Bcas1|76960|breast carcinoma amplified sequence 1	AY219233|Bcas1|76960|breast carcinoma amplified sequence 1	AK020254|Bcas1|76960|breast carcinoma amplified sequence 1	NM_001164369|Bcas1|76960|breast carcinoma amplified sequence 1	NM_029815|Bcas1|76960|breast carcinoma amplified sequence 1
mm9_v1_chr14_+_56194622_56194627	0.422778	HOX{A4,D4}.p2	AK003939|Fitm1|68680|fat storage-inducing transmembrane protein 1
mm9_v1_chr16_+_49913305_49913369	0.421275	HOX{A4,D4}.p2	AK050387|Cd47|16423|CD47 antigen (Rh-related antigen, integrin-associated signal transducer)
mm9_v1_chr3_+_32428382_32428415	0.416096	HOX{A4,D4}.p2	AK141611|Mfn1|67414|mitofusin 1	NM_024200|Mfn1|67414|mitofusin 1	AK018181|Mfn1|67414|mitofusin 1	AK220169|Mfn1|67414|mitofusin 1
mm9_v1_chr13_-_36826245_36826363	0.412716	HOX{A4,D4}.p2	AK161859|Nrn1|68404|neuritin 1	BC035531|Nrn1|68404|neuritin 1	NM_153529|Nrn1|68404|neuritin 1
mm9_v1_chr10_-_127188787_127188853	0.407736	HOX{A4,D4}.p2	AK031480|Gpr182|11536|G protein-coupled receptor 182	NM_007412|Gpr182|11536|G protein-coupled receptor 182
mm9_v1_chr2_+_68973856_68973946	0.40641	HOX{A4,D4}.p2	NM_181547|Nostrin|329416|nitric oxide synthase trafficker	AK052926|Nostrin|329416|nitric oxide synthase trafficker	BC069942|Nostrin|329416|nitric oxide synthase trafficker	AY280963|Nostrin|329416|nitric oxide synthase trafficker	AJ564264|Nostrin|329416|nitric oxide synthase trafficker
mm9_v1_chr10_+_42550365_42550378	0.404354	HOX{A4,D4}.p2	AK017703|Sec63|140740|SEC63-like (S. cerevisiae)
mm9_v1_chr19_+_12770279_12770282	0.403417	HOX{A4,D4}.p2	NM_029550|Keg1|64697|kidney expressed gene 1	AK002360|Keg1|64697|kidney expressed gene 1	AK165349|Keg1|64697|kidney expressed gene 1	AK165515|Keg1|64697|kidney expressed gene 1
mm9_v1_chr9_+_110700669_110700825	0.398669	HOX{A4,D4}.p2	BC060984|Prss42|235628|protease, serine, 42	AB052292|Prss42|235628|protease, serine, 42	NM_153099|Prss42|235628|protease, serine, 42	AK133402|Prss42|235628|protease, serine, 42
mm9_v1_chr1_+_100028032_100028043	0.398589	HOX{A4,D4}.p2	AK007349|1810006J02Rik|69030|RIKEN cDNA 1810006J02 gene
mm9_v1_chr1_+_36818669_36818705	0.396526	HOX{A4,D4}.p2	AK089056|Zap70|22637|zeta-chain (TCR) associated protein kinase	BC029727|Zap70|22637|zeta-chain (TCR) associated protein kinase	U04379|Zap70|22637|zeta-chain (TCR) associated protein kinase	AK039883|Zap70|22637|zeta-chain (TCR) associated protein kinase	NM_009539|Zap70|22637|zeta-chain (TCR) associated protein kinase
mm9_v1_chr1_+_132916420_132916446	0.396414	HOX{A4,D4}.p2	AK152344|Il10|16153|interleukin 10	NM_010548|Il10|16153|interleukin 10	M37897|Il10|16153|interleukin 10	BC120612|Il10|16153|interleukin 10	BC137844|Il10|16153|interleukin 10
mm9_v1_chrX_+_130939318_130939458	0.396185	HOX{A4,D4}.p2	AK038488|Drp2|13497|dystrophin related protein 2	NM_010078|Drp2|13497|dystrophin related protein 2	AK081426|Drp2|13497|dystrophin related protein 2	AK034383|Drp2|13497|dystrophin related protein 2	BC125345|Drp2|13497|dystrophin related protein 2	BC125347|Drp2|13497|dystrophin related protein 2
mm9_v1_chr7_-_15023845_15023901	0.395338	HOX{A4,D4}.p2	BC031851|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene	AK050422|2810007J24Rik|76971|RIKEN cDNA 2810007J24 gene
mm9_v1_chr19_+_10978153_10978193	0.394689	HOX{A4,D4}.p2	AK206563|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)	AK214592|Prpf19|28000|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
mm9_v1_chr19_+_12770289_12770302	0.391364	HOX{A4,D4}.p2	BC010803|Keg1|64697|kidney expressed gene 1	AK165462|Keg1|64697|kidney expressed gene 1	AB028071|Keg1|64697|kidney expressed gene 1
mm9_v1_chr2_+_91386476_91386497	0.390996	HOX{A4,D4}.p2	BC017140|Ckap5|75786|cytoskeleton associated protein 5	BC089032|Ckap5|75786|cytoskeleton associated protein 5	NM_001165989|Ckap5|75786|cytoskeleton associated protein 5	NM_029437|Ckap5|75786|cytoskeleton associated protein 5	BC138334|Ckap5|75786|cytoskeleton associated protein 5	BC096422|Ckap5|75786|cytoskeleton associated protein 5
mm9_v1_chrX_-_99447107_99447107	0.389959	HOX{A4,D4}.p2	BC052030|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	NM_007709|Cited1|12705|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm9_v1_chr8_+_4349587_4349614	0.389017	HOX{A4,D4}.p2	AK131875|Ccl25|20300|chemokine (C-C motif) ligand 25	NM_009138|Ccl25|20300|chemokine (C-C motif) ligand 25	DQ158256|Ccl25|20300|chemokine (C-C motif) ligand 25	AK134138|Ccl25|20300|chemokine (C-C motif) ligand 25	AJ249480|Ccl25|20300|chemokine (C-C motif) ligand 25
mm9_v1_chr12_+_53800302_53800317	0.386373	HOX{A4,D4}.p2	DQ233645|Akap6|238161|A kinase (PRKA) anchor protein 6
mm9_v1_chr18_+_37170365_37170627	0.386085	HOX{A4,D4}.p2	AK141960|Pcdha11|12942|protocadherin alpha 11	AK139436|Pcdha11|12942|protocadherin alpha 11	AK043705|Pcdha11|12942|protocadherin alpha 11	BC141349|Pcdha11|12942|protocadherin alpha 11	AY013758|Pcdha11|12942|protocadherin alpha 11	NM_009960|Pcdha11|12942|protocadherin alpha 11	AB008182|Pcdha11|12942|protocadherin alpha 11
mm9_v1_chr1_+_63492447_63492511	0.383971	HOX{A4,D4}.p2	AK046677|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_001177600|Adam23|23792|a disintegrin and metallopeptidase domain 23	NM_011780|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK034022|Adam23|23792|a disintegrin and metallopeptidase domain 23	AK083458|Adam23|23792|a disintegrin and metallopeptidase domain 23
mm9_v1_chr6_+_120043367_120043412	0.382596	HOX{A4,D4}.p2	AF205634|Ninj2|29862|ninjurin 2	NM_016718|Ninj2|29862|ninjurin 2	AK138486|Ninj2|29862|ninjurin 2	AK163748|Ninj2|29862|ninjurin 2	BC116206|Ninj2|29862|ninjurin 2
mm9_v1_chr17_+_75864877_75864952	0.381276	HOX{A4,D4}.p2	NM_207246|Rasgrp3|240168|RAS, guanyl releasing protein 3	BC066127|Rasgrp3|240168|RAS, guanyl releasing protein 3
mm9_v1_chr16_-_88627910_88627910	0.380893	HOX{A4,D4}.p2	AK010217|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene	NM_027173|2310079G19Rik|69699|RIKEN cDNA 2310079G19 gene
mm9_v1_chr3_+_81800843_81800866	0.379929	HOX{A4,D4}.p2	NM_021370|Accn5|58170|amiloride-sensitive cation channel 5, intestinal	Y19035|Accn5|58170|amiloride-sensitive cation channel 5, intestinal
mm9_v1_chr19_+_12707680_12707797	0.377592	HOX{A4,D4}.p2	AK039262|Glyat|107146|glycine-N-acyltransferase	NM_145935|Glyat|107146|glycine-N-acyltransferase
mm9_v1_chr14_+_52172464_52172464	0.376432	HOX{A4,D4}.p2	BC049649|Gm5622|434459|predicted gene 5622	NM_001013816|Gm5622|434459|predicted gene 5622
mm9_v1_chr11_+_20124648_20124793	0.370388	HOX{A4,D4}.p2	AK207850|Rab1|19324|RAB1, member RAS oncogene family	AK215283|Rab1|19324|RAB1, member RAS oncogene family
mm9_v1_chr17_+_46848407_46848441	0.369262	HOX{A4,D4}.p2	BC003424|Pex6|224824|peroxisomal biogenesis factor 6	NM_145488|Pex6|224824|peroxisomal biogenesis factor 6	AK083898|Pex6|224824|peroxisomal biogenesis factor 6	AK143173|Pex6|224824|peroxisomal biogenesis factor 6	AK030565|Pex6|224824|peroxisomal biogenesis factor 6	AK220525|Pex6|224824|peroxisomal biogenesis factor 6
mm9_v1_chr11_+_101186376_101186385	0.365966	HOX{A4,D4}.p2	AF350445|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	NM_178932|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	BC150843|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)	BC150848|Aoc2|237940|amine oxidase, copper containing 2 (retina-specific)
mm9_v1_chr18_+_37454493_37454629	0.363961	HOX{A4,D4}.p2	NM_053127|Pcdhb2|93873|protocadherin beta 2	BC021789|Pcdhb2|93873|protocadherin beta 2	BC141154|Pcdhb2|93873|protocadherin beta 2	AY013781|Pcdhb2|93873|protocadherin beta 2
mm9_v1_chr4_-_123361602_123361602	0.362812	HOX{A4,D4}.p2	AF150755|Macf1|11426|microtubule-actin crosslinking factor 1	DQ067088|Macf1|11426|microtubule-actin crosslinking factor 1	NM_009600|Macf1|11426|microtubule-actin crosslinking factor 1
mm9_v1_chr11_-_72016872_72016872	0.361567	HOX{A4,D4}.p2	BC043106|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene	NM_028963|4933427D14Rik|74477|RIKEN cDNA 4933427D14 gene
mm9_v1_chr14_+_56194658_56194712	0.35848	HOX{A4,D4}.p2	BC048823|Fitm1|68680|fat storage-inducing transmembrane protein 1
mm9_v1_chr10_-_51915049_51915049	0.356206	HOX{A4,D4}.p2	NM_011282|Ros1|19886|Ros1 proto-oncogene	U15443|Ros1|19886|Ros1 proto-oncogene
mm9_v1_chr8_-_44662019_44662060	0.354916	HOX{A4,D4}.p2	AF167404|Adam26a|13525|a disintegrin and metallopeptidase domain 26A (testase 3)	AK015043|Adam26a|13525|a disintegrin and metallopeptidase domain 26A (testase 3)	AK029756|Adam26a|13525|a disintegrin and metallopeptidase domain 26A (testase 3)	NM_010085|Adam26a|13525|a disintegrin and metallopeptidase domain 26A (testase 3)
mm9_v1_chr5_-_87683812_87683841	0.354537	HOX{A4,D4}.p2	BC019487|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	NM_053215|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37	AK002736|Ugt2b37|112417|UDP glucuronosyltransferase 2 family, polypeptide B37
mm9_v1_chr17_-_37088578_37088736	0.354078	HOX{A4,D4}.p2	BC027737|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK077455|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK089107|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK162607|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK170104|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	AK005379|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11	NM_029632|Ppp1r11|76497|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm9_v1_chr6_-_35258102_35258131	0.349397	HOX{A4,D4}.p2	BC089161|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK036354|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	NM_172892|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK038937|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4	AK139428|Slc13a4|243755|solute carrier family 13 (sodium/sulfate symporters), member 4
mm9_v1_chr7_-_116313821_116313821	0.347912	HOX{A4,D4}.p2	BC053074|Lmo1|109594|LIM domain only 1	NM_057173|Lmo1|109594|LIM domain only 1
mm9_v1_chr1_+_179921565_179921641	0.347386	HOX{A4,D4}.p2	BC147679|Gm16432|545391|predicted gene 16432	BC147686|Gm16432|545391|predicted gene 16432	NM_001034899|Gm16432|545391|predicted gene 16432	AK029617|Gm16432|545391|predicted gene 16432	AK131684|Gm16432|545391|predicted gene 16432
mm9_v1_chr1_+_162917640_162917674	0.34383	HOX{A4,D4}.p2	BC011165|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	S47225|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr12_+_10376776_10376849	0.343824	HOX{A4,D4}.p2	NM_027588|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AK014892|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	BC060976|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AF356186|Nt5c1b|70881|5'-nucleotidase, cytosolic IB	AJ295253|Nt5c1b|70881|5'-nucleotidase, cytosolic IB
mm9_v1_chr1_-_46910333_46910455	0.341988	HOX{A4,D4}.p2	BC062918|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	NM_172653|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10	BC052880|Slc39a10|227059|solute carrier family 39 (zinc transporter), member 10
mm9_v1_chrX_+_146981959_146981987	0.340923	HOX{A4,D4}.p2	NM_001102446|Alas2|11656|aminolevulinic acid synthase 2, erythroid	NM_009653|Alas2|11656|aminolevulinic acid synthase 2, erythroid	AK077610|Alas2|11656|aminolevulinic acid synthase 2, erythroid
mm9_v1_chr2_+_90858663_90858815	0.340075	HOX{A4,D4}.p2	AK080832|Celf1|13046|CUGBP, Elav-like family member 1	AK160135|Celf1|13046|CUGBP, Elav-like family member 1
mm9_v1_chr5_-_86947601_86947624	0.339115	HOX{A4,D4}.p2	BC118660|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	BC118611|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	AK036981|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene	NM_177162|9930032O22Rik|320454|RIKEN cDNA 9930032O22 gene
mm9_v1_chr19_-_4012698_4012725	0.337145	HOX{A4,D4}.p2	AK075692|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	AK005021|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	BC014818|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1	NM_133666|Ndufv1|17995|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm9_v1_chr2_+_29202327_29202356	0.336317	HOX{A4,D4}.p2	AK147181|Med27|68975|mediator complex subunit 27	BC016537|Med27|68975|mediator complex subunit 27	AK009764|Med27|68975|mediator complex subunit 27	AK005251|Med27|68975|mediator complex subunit 27	NM_026896|Med27|68975|mediator complex subunit 27
mm9_v1_chr12_+_86474651_86474814	0.334919	HOX{A4,D4}.p2	AK218097|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK201762|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK202210|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK205589|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK206354|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK207941|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK209363|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK210896|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK219425|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	AK186759|Dlst|78920|dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)
mm9_v1_chr16_-_4523061_4523074	0.333962	HOX{A4,D4}.p2	AK036394|Srl|106393|sarcalumenin	BC145687|Srl|106393|sarcalumenin
mm9_v1_chr8_+_32239179_32239274	0.333303	HOX{A4,D4}.p2	AK004356|Rnf122|68867|ring finger protein 122
mm9_v1_chrX_+_34985927_34985927	0.333181	HOX{A4,D4}.p2	NM_001085356|Rhox2f|434764|reproductive homeobox 2F
mm9_v1_chr17_+_71553920_71554003	0.332605	HOX{A4,D4}.p2	AK165218|Lpin2|64898|lipin 2	AK050018|Lpin2|64898|lipin 2	NM_001164885|Lpin2|64898|lipin 2
mm9_v1_chr1_+_145586675_145586780	0.332387	HOX{A4,D4}.p2	NM_001038592|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_023505|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC065387|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF380337|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132031|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC132033|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145303|Glrx2|69367|glutaredoxin 2 (thioltransferase)	BC145304|Glrx2|69367|glutaredoxin 2 (thioltransferase)	AF276918|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr11_+_84008939_84008965	0.332359	HOX{A4,D4}.p2	NM_133360|Acaca|107476|acetyl-Coenzyme A carboxylase alpha	AY451393|Acaca|107476|acetyl-Coenzyme A carboxylase alpha
mm9_v1_chr4_+_52609145_52609145	0.329761	HOX{A4,D4}.p2	AK019748|4930547C10Rik|68274|RIKEN cDNA 4930547C10 gene	NM_026652|4930547C10Rik|68274|RIKEN cDNA 4930547C10 gene
mm9_v1_chrX_-_133275812_133275890	0.329267	HOX{A4,D4}.p2	AK089963|Morf4l2|56397|mortality factor 4 like 2	AK153146|Morf4l2|56397|mortality factor 4 like 2	AK075946|Morf4l2|56397|mortality factor 4 like 2	AK131944|Morf4l2|56397|mortality factor 4 like 2	AK145686|Morf4l2|56397|mortality factor 4 like 2	AK150401|Morf4l2|56397|mortality factor 4 like 2	AK150670|Morf4l2|56397|mortality factor 4 like 2	AK151570|Morf4l2|56397|mortality factor 4 like 2	AK159179|Morf4l2|56397|mortality factor 4 like 2	AK160012|Morf4l2|56397|mortality factor 4 like 2	AK164433|Morf4l2|56397|mortality factor 4 like 2	AK165985|Morf4l2|56397|mortality factor 4 like 2	AK159145|Morf4l2|56397|mortality factor 4 like 2	NM_001168226|Morf4l2|56397|mortality factor 4 like 2	NM_001168229|Morf4l2|56397|mortality factor 4 like 2
mm9_v1_chr6_-_57929295_57929295	0.328185	HOX{A4,D4}.p2	NM_053238|Vmn1r25|113865|vomeronasal 1 receptor 25
mm9_v1_chr6_-_93628981_93629110	0.327556	HOX{A4,D4}.p2	AF027505|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1	AK081387|Magi1|14924|membrane associated guanylate kinase, WW and PDZ domain containing 1
mm9_v1_chr2_+_69508174_69508176	0.327439	HOX{A4,D4}.p2	AK132646|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10	NM_001081087|Kbtbd10|228003|kelch repeat and BTB (POZ) domain containing 10
mm9_v1_chr9_+_14305110_14305173	0.327069	HOX{A4,D4}.p2	AK003834|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK002864|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK145249|Cwc15|66070|CWC15 homolog (S. cerevisiae)	BC004726|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK013670|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK167776|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK168365|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AK003202|Cwc15|66070|CWC15 homolog (S. cerevisiae)	AJ250394|Cwc15|66070|CWC15 homolog (S. cerevisiae)
mm9_v1_chr3_+_94641626_94641643	0.323774	HOX{A4,D4}.p2	BC085188|Pogz|229584|pogo transposable element with ZNF domain	AK035255|Pogz|229584|pogo transposable element with ZNF domain	AK086062|Pogz|229584|pogo transposable element with ZNF domain	AK161889|Pogz|229584|pogo transposable element with ZNF domain	BC139432|Pogz|229584|pogo transposable element with ZNF domain	BC139433|Pogz|229584|pogo transposable element with ZNF domain
mm9_v1_chr18_+_35776026_35776084	0.323627	HOX{A4,D4}.p2	AK012839|Paip2|67869|polyadenylate-binding protein-interacting protein 2
mm9_v1_chr5_-_24781987_24782111	0.321955	HOX{A4,D4}.p2	AK077567|Mll3|231051|myeloid/lymphoid or mixed-lineage leukemia 3
mm9_v1_chr11_-_75252400_75252413	0.321318	HOX{A4,D4}.p2	AK090208|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2
mm9_v1_chr2_+_164439199_164439221	0.320823	HOX{A4,D4}.p2	AY541526|Wfdc6b|433502|WAP four-disulfide core domain 6B	NM_001012725|Wfdc6b|433502|WAP four-disulfide core domain 6B	BC141216|Wfdc6b|433502|WAP four-disulfide core domain 6B
mm9_v1_chr3_+_68673489_68673528	0.320752	HOX{A4,D4}.p2	NM_001167996|1110032F04Rik|68725|RIKEN cDNA 1110032F04 gene
mm9_v1_chr14_-_73768214_73768311	0.320038	HOX{A4,D4}.p2	AK198503|Itm2b|16432|integral membrane protein 2B	AK197360|Itm2b|16432|integral membrane protein 2B	AB030204|Itm2b|16432|integral membrane protein 2B
mm9_v1_chr9_-_57531425_57531441	0.316026	HOX{A4,D4}.p2	X04283|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	BC018298|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr10_-_36855668_36856157	0.314101	HOX{A4,D4}.p2	AK151646|Marcks|17118|myristoylated alanine rich protein kinase C substrate	AK153217|Marcks|17118|myristoylated alanine rich protein kinase C substrate
mm9_v1_chr7_-_49314350_49314350	0.309322	HOX{A4,D4}.p2	NM_001105056|Vmn2r59|628444|vomeronasal 2, receptor 59
mm9_v1_chr5_+_139865857_139865857	0.3091	HOX{A4,D4}.p2	AK137454|Gpr146|80290|G protein-coupled receptor 146	NM_001038703|Gpr146|80290|G protein-coupled receptor 146
mm9_v1_chr19_+_34035676_34035740	0.308494	HOX{A4,D4}.p2	AK009923|Lipf|67717|lipase, gastric	AK009428|Lipf|67717|lipase, gastric	AK009431|Lipf|67717|lipase, gastric	AK009546|Lipf|67717|lipase, gastric	AK075913|Lipf|67717|lipase, gastric	AK009300|Lipf|67717|lipase, gastric	AK009359|Lipf|67717|lipase, gastric	AK009413|Lipf|67717|lipase, gastric	AK009437|Lipf|67717|lipase, gastric	AK009459|Lipf|67717|lipase, gastric	AK009473|Lipf|67717|lipase, gastric	AK009474|Lipf|67717|lipase, gastric	AK009523|Lipf|67717|lipase, gastric	AK009525|Lipf|67717|lipase, gastric	AK009537|Lipf|67717|lipase, gastric	AK009560|Lipf|67717|lipase, gastric	AK009571|Lipf|67717|lipase, gastric	AK009573|Lipf|67717|lipase, gastric	AK009729|Lipf|67717|lipase, gastric	AK009773|Lipf|67717|lipase, gastric	AK009875|Lipf|67717|lipase, gastric	AK009990|Lipf|67717|lipase, gastric	AK010019|Lipf|67717|lipase, gastric	AK010026|Lipf|67717|lipase, gastric	AK010035|Lipf|67717|lipase, gastric	AK010036|Lipf|67717|lipase, gastric	AK010058|Lipf|67717|lipase, gastric	AK010061|Lipf|67717|lipase, gastric	AK010091|Lipf|67717|lipase, gastric	AK010093|Lipf|67717|lipase, gastric	AK010103|Lipf|67717|lipase, gastric	AK010106|Lipf|67717|lipase, gastric	AK010110|Lipf|67717|lipase, gastric	AK010116|Lipf|67717|lipase, gastric	AK010123|Lipf|67717|lipase, gastric	AK010125|Lipf|67717|lipase, gastric	AK010139|Lipf|67717|lipase, gastric	AK010148|Lipf|67717|lipase, gastric	AK010173|Lipf|67717|lipase, gastric	AK010203|Lipf|67717|lipase, gastric	AK010231|Lipf|67717|lipase, gastric	AK010236|Lipf|67717|lipase, gastric	BC061067|Lipf|67717|lipase, gastric	NM_026334|Lipf|67717|lipase, gastric	AK009479|Lipf|67717|lipase, gastric	AK009544|Lipf|67717|lipase, gastric
mm9_v1_chr15_-_102196701_102196763	0.307451	HOX{A4,D4}.p2	BC113150|Sp7|170574|Sp7 transcription factor 7	NM_130458|Sp7|170574|Sp7 transcription factor 7	AK032521|Sp7|170574|Sp7 transcription factor 7	AF184902|Sp7|170574|Sp7 transcription factor 7	AK076229|Sp7|170574|Sp7 transcription factor 7
mm9_v1_chr7_+_17460697_17460886	0.305689	HOX{A4,D4}.p2	AB073971|Dact3|629378|dapper homolog 3, antagonist of beta-catenin (xenopus)
mm9_v1_chr4_+_143649028_143649028	0.304608	HOX{A4,D4}.p2	AK145585|Pramel4|347710|preferentially expressed antigen in melanoma like 4	AK163305|Pramel4|347710|preferentially expressed antigen in melanoma like 4	NM_001001319|Pramel4|347710|preferentially expressed antigen in melanoma like 4
mm9_v1_chr12_-_35213738_35213753	0.303804	HOX{A4,D4}.p2	BC098187|Hdac9|79221|histone deacetylase 9	NM_024124|Hdac9|79221|histone deacetylase 9
mm9_v1_chr8_-_3624988_3625048	0.303272	HOX{A4,D4}.p2	AK003002|Pcp2|18545|Purkinje cell protein 2 (L7)	AK160398|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129804|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chr7_-_107731579_107731643	0.302924	HOX{A4,D4}.p2	AK077636|Mrpl48|52443|mitochondrial ribosomal protein L48	BC037190|Mrpl48|52443|mitochondrial ribosomal protein L48	AK019161|Mrpl48|52443|mitochondrial ribosomal protein L48	AK171917|Mrpl48|52443|mitochondrial ribosomal protein L48	NM_198831|Mrpl48|52443|mitochondrial ribosomal protein L48
mm9_v1_chr1_-_165015800_165015800	0.302792	HOX{A4,D4}.p2	AK019544|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene	NM_030071|4921528O07Rik|78258|RIKEN cDNA 4921528O07 gene
mm9_v1_chr2_-_130912481_130912549	0.302769	HOX{A4,D4}.p2	NM_011426|Siglec1|20612|sialic acid binding Ig-like lectin 1, sialoadhesin	Z36233|Siglec1|20612|sialic acid binding Ig-like lectin 1, sialoadhesin	Z36234|Siglec1|20612|sialic acid binding Ig-like lectin 1, sialoadhesin	Z36293|Siglec1|20612|sialic acid binding Ig-like lectin 1, sialoadhesin
mm9_v1_chr10_+_32803288_32803366	0.30113	HOX{A4,D4}.p2	NM_029726|Trdn|76757|triadin	AK009816|Trdn|76757|triadin	AF223415|Trdn|76757|triadin	AF223416|Trdn|76757|triadin	BC034343|Trdn|76757|triadin	AF223417|Trdn|76757|triadin
mm9_v1_chr1_-_174825160_174825190	0.296961	HOX{A4,D4}.p2	M23552|Apcs|20219|serum amyloid P-component	X14079|Apcs|20219|serum amyloid P-component	Y00426|Apcs|20219|serum amyloid P-component	NM_011318|Apcs|20219|serum amyloid P-component
mm9_v1_chr3_-_63654912_63654960	0.296638	HOX{A4,D4}.p2	AY691172|Plch1|269437|phospholipase C, eta 1	AY691173|Plch1|269437|phospholipase C, eta 1	AY691174|Plch1|269437|phospholipase C, eta 1	NM_001177732|Plch1|269437|phospholipase C, eta 1	NM_001177733|Plch1|269437|phospholipase C, eta 1	NM_183191|Plch1|269437|phospholipase C, eta 1	BC055005|Plch1|269437|phospholipase C, eta 1
mm9_v1_chr9_+_120001250_120001250	0.295211	HOX{A4,D4}.p2	NM_007720|Ccr8|12776|chemokine (C-C motif) receptor 8	Z98205|Ccr8|12776|chemokine (C-C motif) receptor 8
mm9_v1_chr1_+_174078297_174078312	0.295024	HOX{A4,D4}.p2	BC078641|Dcaf8|98193|DDB1 and CUL4 associated factor 8
mm9_v1_chr8_+_114061310_114061413	0.293981	HOX{A4,D4}.p2	AK078819|Znrf1|170737|zinc and ring finger 1	AK076756|Znrf1|170737|zinc and ring finger 1	AK216619|Znrf1|170737|zinc and ring finger 1
mm9_v1_chr16_+_94914273_94914275	0.293797	HOX{A4,D4}.p2	AK165966|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	AK163136|Dyrk1a|13548|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a
mm9_v1_chr17_-_36599261_36599273	0.293298	HOX{A4,D4}.p2	AY211081|H2-M10.4|224753|histocompatibility 2, M region locus 10.4	AF539600|H2-M10.4|224753|histocompatibility 2, M region locus 10.4	NM_177634|H2-M10.4|224753|histocompatibility 2, M region locus 10.4
mm9_v1_chrX_-_57400778_57400876	0.292801	HOX{A4,D4}.p2	BC125435|Mcf2|109904|mcf.2 transforming sequence	AB052945|Mcf2|109904|mcf.2 transforming sequence	AB101616|Mcf2|109904|mcf.2 transforming sequence	NM_133197|Mcf2|109904|mcf.2 transforming sequence	AK032122|Mcf2|109904|mcf.2 transforming sequence
mm9_v1_chrX_+_34868165_34868165	0.29	HOX{A4,D4}.p2	NM_001099318|Rhox2c|100039948|reproductive homeobox 2C
mm9_v1_chr11_-_86509102_86509123	0.288733	HOX{A4,D4}.p2	AK018633|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr2_-_120796395_120796492	0.288276	HOX{A4,D4}.p2	AF061555|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1	NM_009461|Ubr1|22222|ubiquitin protein ligase E3 component n-recognin 1
mm9_v1_chr12_+_58665101_58665119	0.287409	HOX{A4,D4}.p2	BC100489|4921506M07Rik|70846|RIKEN cDNA 4921506M07 gene	NM_001037743|4921506M07Rik|70846|RIKEN cDNA 4921506M07 gene	AK014828|4921506M07Rik|70846|RIKEN cDNA 4921506M07 gene
mm9_v1_chr18_+_74893369_74893418	0.287227	HOX{A4,D4}.p2	AK033484|Myo5b|17919|myosin VB
mm9_v1_chr2_-_181406313_181406348	0.286243	HOX{A4,D4}.p2	L35032|Sox18|20672|SRY-box containing gene 18	BC006612|Sox18|20672|SRY-box containing gene 18	AK144281|Sox18|20672|SRY-box containing gene 18	NM_009236|Sox18|20672|SRY-box containing gene 18
mm9_v1_chr13_+_14722520_14722529	0.283098	HOX{A4,D4}.p2	AK167401|AW209491|105351|expressed sequence AW209491	NM_134067|AW209491|105351|expressed sequence AW209491
mm9_v1_chrX_-_151467834_151467834	0.28179	HOX{A4,D4}.p2	NM_020016|Magea2|17138|melanoma antigen, family A, 2
mm9_v1_chr2_-_91469372_91469446	0.281638	HOX{A4,D4}.p2	M81394|F2|14061|coagulation factor II
mm9_v1_chr7_+_31536489_31536560	0.281622	HOX{A4,D4}.p2	BC051531|Sbsn|282619|suprabasin	NM_001083903|Sbsn|282619|suprabasin	NM_172205|Sbsn|282619|suprabasin	AY115494|Sbsn|282619|suprabasin	AY444556|Sbsn|282619|suprabasin	BC139385|Sbsn|282619|suprabasin	AK081760|Sbsn|282619|suprabasin	BC092350|Sbsn|282619|suprabasin
mm9_v1_chrX_+_98644445_98644450	0.281068	HOX{A4,D4}.p2	AK003906|Itgb1bp2|26549|integrin beta 1 binding protein 2	NM_013712|Itgb1bp2|26549|integrin beta 1 binding protein 2
mm9_v1_chr11_-_106642357_106642481	0.276781	HOX{A4,D4}.p2	AK011169|Ddx5|13207|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm9_v1_chr7_-_35098515_35098544	0.276232	HOX{A4,D4}.p2	AK170198|4931406P16Rik|233103|RIKEN cDNA 4931406P16 gene
mm9_v1_chr18_-_75857207_75857349	0.274908	HOX{A4,D4}.p2	BC058104|Ctif|269037|CBP80/20-dependent translation initiation factor	NM_201354|Ctif|269037|CBP80/20-dependent translation initiation factor
mm9_v1_chr2_+_93027704_93027759	0.272933	HOX{A4,D4}.p2	AK142316|Trp53i11|277414|transformation related protein 53 inducible protein 11	BC098206|Trp53i11|277414|transformation related protein 53 inducible protein 11	NM_001025246|Trp53i11|277414|transformation related protein 53 inducible protein 11
mm9_v1_chr6_-_130256444_130256498	0.27242	HOX{A4,D4}.p2	AF204265|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204266|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204267|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF204268|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	BC099861|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF074460|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF283250|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283251|Klra23|79410|killer cell lectin-like receptor subfamily A, member 23	AF283252|Klra13-ps|16631|killer cell lectin-like receptor subfamily A, member 13, pseudogene	AF307947|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	AF307948|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12	NM_010646|Klra12|16630|killer cell lectin-like receptor subfamily A, member 12
mm9_v1_chr7_-_88643156_88643215	0.270474	HOX{A4,D4}.p2	BC145512|BC048679|210321|cDNA sequence BC048679	BC145514|BC048679|210321|cDNA sequence BC048679	AY226992|BC048679|210321|cDNA sequence BC048679	BC048679|BC048679|210321|cDNA sequence BC048679	NM_001193274|BC048679|210321|cDNA sequence BC048679	NM_183143|BC048679|210321|cDNA sequence BC048679
mm9_v1_chr5_+_88515580_88515617	0.269827	HOX{A4,D4}.p2	NM_021289|Smr2|20600|submaxillary gland androgen regulated protein 2	U82376|Smr2|20600|submaxillary gland androgen regulated protein 2	U82377|Smr2|20600|submaxillary gland androgen regulated protein 2	U82378|Smr2|20600|submaxillary gland androgen regulated protein 2	U82379|Smr2|20600|submaxillary gland androgen regulated protein 2	U82380|Smr2|20600|submaxillary gland androgen regulated protein 2	BC111829|Smr2|20600|submaxillary gland androgen regulated protein 2
mm9_v1_chr15_+_4848736_4848736	0.269087	HOX{A4,D4}.p2	AK015457|Heatr7b2|223825|XVHEAT repeat family member 7B2	NM_001166066|Heatr7b2|223825|XVHEAT repeat family member 7B2
mm9_v1_chr3_+_98084352_98084426	0.268988	HOX{A4,D4}.p2	NM_008256|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004865|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK004902|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	AK098104|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC014714|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	BC024744|Hmgcs2|15360|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm9_v1_chr11_-_99283568_99283572	0.267508	HOX{A4,D4}.p2	BC131911|Krt12|268482|keratin 12	AK143182|Krt12|268482|keratin 12	U02880|Krt12|268482|keratin 12	AK053362|Krt12|268482|keratin 12	NM_010661|Krt12|268482|keratin 12
mm9_v1_chr6_+_73198498_73198722	0.261451	HOX{A4,D4}.p2	NM_019879|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK088888|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK005080|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK087390|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK002754|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AF144101|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK139288|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	BC011087|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit	AK184184|Suclg1|56451|succinate-CoA ligase, GDP-forming, alpha subunit
mm9_v1_chr9_-_105372402_105372478	0.259233	HOX{A4,D4}.p2	AK209035|Atp2c1|235574|ATPase, Ca++-sequestering	AK173154|Atp2c1|235574|ATPase, Ca++-sequestering	AJ551270|Atp2c1|235574|ATPase, Ca++-sequestering
mm9_v1_chr17_-_37761577_37761577	0.258731	HOX{A4,D4}.p2	NM_146632|Olfr116|258625|olfactory receptor 116
mm9_v1_chr6_-_130336891_130336991	0.258591	HOX{A4,D4}.p2	AY078436|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	NM_016659|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF419250|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1	AF444273|Klra1|16627|killer cell lectin-like receptor, subfamily A, member 1
mm9_v1_chr6_-_137119016_137119017	0.256789	HOX{A4,D4}.p2	NM_181988|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	BC026463|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr3_-_102586596_102586636	0.256448	HOX{A4,D4}.p2	M35719|Tshb|22094|thyroid stimulating hormone, beta subunit	M35720|Tshb|22094|thyroid stimulating hormone, beta subunit	M35721|Tshb|22094|thyroid stimulating hormone, beta subunit	M35723|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165939|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_001165940|Tshb|22094|thyroid stimulating hormone, beta subunit	NM_009432|Tshb|22094|thyroid stimulating hormone, beta subunit
mm9_v1_chr10_+_25079603_25079644	0.256147	HOX{A4,D4}.p2	AK144088|Epb4.1l2|13822|erythrocyte protein band 4.1-like 2
mm9_v1_chr19_-_11679226_11679234	0.255884	HOX{A4,D4}.p2	AB026047|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D	BC018331|Ms4a6d|68774|membrane-spanning 4-domains, subfamily A, member 6D
mm9_v1_chr11_+_89892027_89892040	0.254637	HOX{A4,D4}.p2	AK003574|Tmem100|67888|transmembrane protein 100	AK033406|Tmem100|67888|transmembrane protein 100
mm9_v1_chr14_-_69273768_69273898	0.253916	HOX{A4,D4}.p2	BC058782|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF153350|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK052479|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK036800|Adam28|13522|a disintegrin and metallopeptidase domain 28	AK081736|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163293|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163290|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163291|Adam28|13522|a disintegrin and metallopeptidase domain 28	AF163292|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_001048175|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_010082|Adam28|13522|a disintegrin and metallopeptidase domain 28	NM_183366|Adam28|13522|a disintegrin and metallopeptidase domain 28
mm9_v1_chr1_-_137406954_137407027	0.253536	HOX{A4,D4}.p2	AK082667|Nav1|215690|neuron navigator 1	AK053255|Nav1|215690|neuron navigator 1
mm9_v1_chr19_-_6982094_6982140	0.244418	HOX{A4,D4}.p2	BC014682|Prdx5|54683|peroxiredoxin 5
mm9_v1_chr8_-_28524173_28524415	0.236812	HOX{A4,D4}.p2	AY574265|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AJ245706|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	AK149262|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	BC031985|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6	NM_021369|Chrna6|11440|cholinergic receptor, nicotinic, alpha polypeptide 6
mm9_v1_chr12_+_77938392_77938461	0.234193	HOX{A4,D4}.p2	AK008228|Fntb|110606|farnesyltransferase, CAAX box, beta	AK089911|Fntb|110606|farnesyltransferase, CAAX box, beta	BC031417|Fntb|110606|farnesyltransferase, CAAX box, beta	NM_145927|Fntb|110606|farnesyltransferase, CAAX box, beta
mm9_v1_chr17_-_71948080_71948114	0.233296	HOX{A4,D4}.p2	AK032413|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)	AK036113|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr4_+_48572811_48572818	0.232757	HOX{A4,D4}.p2	BC028651|5730528L13Rik|66665|RIKEN cDNA 5730528L13 gene
mm9_v1_chr6_-_135204232_135204353	0.229266	HOX{A4,D4}.p2	D87325|Gsg1|14840|germ cell-specific gene 1	NM_001080553|Gsg1|14840|germ cell-specific gene 1	NM_010352|Gsg1|14840|germ cell-specific gene 1
mm9_v1_chr1_-_30861874_30861889	0.228573	HOX{A4,D4}.p2	AK086788|Phf3|213109|PHD finger protein 3
mm9_v1_chr9_-_57531452_57531467	0.228376	HOX{A4,D4}.p2	BC054827|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	K02589|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	NM_009993|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2	X00479|Cyp1a2|13077|cytochrome P450, family 1, subfamily a, polypeptide 2
mm9_v1_chr17_+_25257704_25257721	0.226787	HOX{A4,D4}.p2	NM_001163416|Ptx4|68509|pentraxin 4	NM_026747|Ptx4|68509|pentraxin 4	BC107380|Ptx4|68509|pentraxin 4	BC107381|Ptx4|68509|pentraxin 4	BC115902|Ptx4|68509|pentraxin 4	BC118508|Ptx4|68509|pentraxin 4
mm9_v1_chr17_+_18288893_18288893	0.225155	HOX{A4,D4}.p2	NM_001104541|Vmn2r92|627111|vomeronasal 2, receptor 92
mm9_v1_chr19_+_4006795_4006924	0.225111	HOX{A4,D4}.p2	
mm9_v1_chr7_+_29955228_29955228	0.225041	HOX{A4,D4}.p2	BC089358|Ggn|243897|gametogenetin	NM_182694|Ggn|243897|gametogenetin
mm9_v1_chr1_-_170362244_170362272	0.224652	HOX{A4,D4}.p2	BC054376|Pbx1|18514|pre B-cell leukemia transcription factor 1	AK037006|Pbx1|18514|pre B-cell leukemia transcription factor 1
mm9_v1_chr8_-_42127124_42127219	0.224488	HOX{A4,D4}.p2	AF173380|Mtus1|102103|mitochondrial tumor suppressor 1	AF493235|Mtus1|102103|mitochondrial tumor suppressor 1	AK031693|Mtus1|102103|mitochondrial tumor suppressor 1
mm9_v1_chr1_+_162917586_162917638	0.223993	HOX{A4,D4}.p2	BC033377|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	AK050295|Serpinc1|11905|serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1
mm9_v1_chr13_-_104533638_104533655	0.223407	HOX{A4,D4}.p2	
mm9_v1_chrX_+_62300818_62300824	0.223197	HOX{A4,D4}.p2	AK006526|Ctag2|70062|cancer/testis antigen 2	NM_027302|Ctag2|70062|cancer/testis antigen 2	BC049681|Ctag2|70062|cancer/testis antigen 2
mm9_v1_chr17_+_26389850_26389887	0.221174	HOX{A4,D4}.p2	AK160293|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_025881|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like	NM_028190|Luc7l|66978|Luc7 homolog (S. cerevisiae)-like
mm9_v1_chr6_+_50150160_50150179	0.219584	HOX{A4,D4}.p2	AK047380|Mpp6|56524|membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)
mm9_v1_chr18_+_37493599_37493681	0.219177	HOX{A4,D4}.p2	BC150716|Pcdhb6|93877|protocadherin beta 6	AY013788|Pcdhb6|93877|protocadherin beta 6	NM_053131|Pcdhb6|93877|protocadherin beta 6
mm9_v1_chr15_+_98538624_98538661	0.217913	HOX{A4,D4}.p2	AK077174|Ccdc65|105833|coiled-coil domain containing 65	BC048073|Ccdc65|105833|coiled-coil domain containing 65	AF454432|Ccdc65|105833|coiled-coil domain containing 65	NM_153518|Ccdc65|105833|coiled-coil domain containing 65	BC056947|Ccdc65|105833|coiled-coil domain containing 65	BC060155|Ccdc65|105833|coiled-coil domain containing 65
mm9_v1_chr7_+_51964112_51964152	0.216189	HOX{A4,D4}.p2	NM_029317|Izumo2|75510|IZUMO family member 2	AK006268|Izumo2|75510|IZUMO family member 2	BC048526|Izumo2|75510|IZUMO family member 2
mm9_v1_chr7_+_30880094_30880209	0.215661	HOX{A4,D4}.p2	BC085180|Zfp260|26466|zinc finger protein 260	NM_011981|Zfp260|26466|zinc finger protein 260	AK156219|Zfp260|26466|zinc finger protein 260
mm9_v1_chr13_+_14722530_14722557	0.214598	HOX{A4,D4}.p2	AK030506|AW209491|105351|expressed sequence AW209491	AK050507|AW209491|105351|expressed sequence AW209491	AK077649|AW209491|105351|expressed sequence AW209491
mm9_v1_chrX_-_46641384_46641392	0.213687	HOX{A4,D4}.p2	AK077508|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK133956|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK137736|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK139897|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	BC025915|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr14_-_101599285_101599285	0.211893	HOX{A4,D4}.p2	NM_029680|1700110M21Rik|76627|RIKEN cDNA 1700110M21 gene
mm9_v1_chr4_-_134409149_134409155	0.211584	HOX{A4,D4}.p2	AK038972|Tmem57|66146|transmembrane protein 57	BC054769|Tmem57|66146|transmembrane protein 57
mm9_v1_chr4_-_118162385_118162453	0.211487	HOX{A4,D4}.p2	AK052413|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	AK051512|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1	NM_011587|Tie1|21846|tyrosine kinase with immunoglobulin-like and EGF-like domains 1
mm9_v1_chr3_+_92189606_92189634	0.208183	HOX{A4,D4}.p2	AY158992|Sprr2h|20762|small proline-rich protein 2H	NM_011474|Sprr2h|20762|small proline-rich protein 2H	BC099889|Sprr2h|20762|small proline-rich protein 2H	BC127024|Sprr2h|20762|small proline-rich protein 2H	AJ005566|Sprr2h|20762|small proline-rich protein 2H
mm9_v1_chr5_-_149995789_149995819	0.207069	HOX{A4,D4}.p2	AK017599|5730422E09Rik|433966|RIKEN cDNA 5730422E09 gene
mm9_v1_chr17_-_7152972_7153124	0.201739	HOX{A4,D4}.p2	BC110284|Rsph3a|66832|radial spoke 3A homolog (Chlamydomonas)
mm9_v1_chr8_+_28558141_28558141	0.200364	HOX{A4,D4}.p2	AK015012|Poteg|70952|POTE ankyrin domain family, member G	AK015165|Poteg|70952|POTE ankyrin domain family, member G	AK015473|Poteg|70952|POTE ankyrin domain family, member G	DQ298444|Poteg|70952|POTE ankyrin domain family, member G	DQ517440|Poteg|70952|POTE ankyrin domain family, member G	NM_026256|Poteg|70952|POTE ankyrin domain family, member G	NM_027618|Poteg|70952|POTE ankyrin domain family, member G
mm9_v1_chr9_+_40612447_40612687	0.199906	HOX{A4,D4}.p2	AK193113|Hspa8|15481|heat shock protein 8	AK197541|Hspa8|15481|heat shock protein 8	AK197732|Hspa8|15481|heat shock protein 8	AK198838|Hspa8|15481|heat shock protein 8	AK204272|Hspa8|15481|heat shock protein 8	AK216907|Hspa8|15481|heat shock protein 8	AK218570|Hspa8|15481|heat shock protein 8	AK190709|Hspa8|15481|heat shock protein 8	AK192102|Hspa8|15481|heat shock protein 8	AK217841|LOC624853|624853|hypothetical LOC624853	AK218761|Hspa8|15481|heat shock protein 8	AK184860|Hspa8|15481|heat shock protein 8	AK217969|Hspa8|15481|heat shock protein 8	AK200291|Hspa8|15481|heat shock protein 8	AK219581|LOC624853|624853|hypothetical LOC624853	AK195783|Hspa8|15481|heat shock protein 8	AK209652|Hspa8|15481|heat shock protein 8	AK192871|LOC624853|624853|hypothetical LOC624853	AK200192|Hspa8|15481|heat shock protein 8	AK202523|LOC624853|624853|hypothetical LOC624853	AK194470|Hspa8|15481|heat shock protein 8	AK205012|LOC624853|624853|hypothetical LOC624853	AK194530|LOC624853|624853|hypothetical LOC624853	AK197043|LOC624853|624853|hypothetical LOC624853
mm9_v1_chr11_-_75252976_75253008	0.199772	HOX{A4,D4}.p2	BC026756|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	Z36774|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	NM_008878|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2	AK077563|Serpinf2|18816|serine (or cysteine) peptidase inhibitor, clade F, member 2
mm9_v1_chr19_+_56905201_56905201	0.199474	HOX{A4,D4}.p2	AB183528|Tdrd1|83561|tudor domain containing 1	NM_001002241|Tdrd1|83561|tudor domain containing 1
mm9_v1_chr12_+_37108036_37108345	0.198577	HOX{A4,D4}.p2	AK045940|Ispd|75847|isoprenoid synthase domain containing	BC086665|Ispd|75847|isoprenoid synthase domain containing	NM_178629|Ispd|75847|isoprenoid synthase domain containing	BC096030|Ispd|75847|isoprenoid synthase domain containing	AK039004|Ispd|75847|isoprenoid synthase domain containing	BC050993|Ispd|75847|isoprenoid synthase domain containing	BC118038|Ispd|75847|isoprenoid synthase domain containing	AK051322|Ispd|75847|isoprenoid synthase domain containing
mm9_v1_chr2_-_155984800_155984951	0.195545	HOX{A4,D4}.p2	AK134091|Rbm39|170791|RNA binding motif protein 39
mm9_v1_chr3_+_135011000_135011069	0.193984	HOX{A4,D4}.p2	AK029525|Nhedc1|74446|Na+/H+ exchanger domain containing 1	NM_028946|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK007064|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK015318|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK016883|Nhedc1|74446|Na+/H+ exchanger domain containing 1	AK016917|Nhedc1|74446|Na+/H+ exchanger domain containing 1	BC025002|Nhedc1|74446|Na+/H+ exchanger domain containing 1
mm9_v1_chr2_+_163843744_163843775	0.192416	HOX{A4,D4}.p2	
mm9_v1_chr8_+_113370907_113370999	0.19235	HOX{A4,D4}.p2	NM_133973|Cog4|102339|component of oligomeric golgi complex 4	AK090225|Cog4|102339|component of oligomeric golgi complex 4	AK156466|Cog4|102339|component of oligomeric golgi complex 4	AK172465|Cog4|102339|component of oligomeric golgi complex 4	BC023120|Cog4|102339|component of oligomeric golgi complex 4	AK182269|Cog4|102339|component of oligomeric golgi complex 4
mm9_v1_chr14_-_102008407_102008407	0.189603	HOX{A4,D4}.p2	AK039337|Tbc1d4|210789|TBC1 domain family, member 4	NM_001081278|Tbc1d4|210789|TBC1 domain family, member 4
mm9_v1_chr5_-_123632567_123632737	0.188386	HOX{A4,D4}.p2	X59530|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	NM_008277|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	BC013343|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	AK149416|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase	D29987|Hpd|15445|4-hydroxyphenylpyruvic acid dioxygenase
mm9_v1_chr1_-_39535525_39535591	0.185493	HOX{A4,D4}.p2	BC065081|Tbc1d8|54610|TBC1 domain family, member 8	AK141816|Tbc1d8|54610|TBC1 domain family, member 8	AK141520|Tbc1d8|54610|TBC1 domain family, member 8	AK138630|Tbc1d8|54610|TBC1 domain family, member 8	NM_018775|Tbc1d8|54610|TBC1 domain family, member 8
mm9_v1_chr4_-_148473897_148473960	0.184574	HOX{A4,D4}.p2	BC028952|Pex14|56273|peroxisomal biogenesis factor 14	AF097512|Pex14|56273|peroxisomal biogenesis factor 14	NM_019781|Pex14|56273|peroxisomal biogenesis factor 14	AK148779|Pex14|56273|peroxisomal biogenesis factor 14
mm9_v1_chr7_+_6173879_6173879	0.182844	HOX{A4,D4}.p2	AK139659|Zscan5b|170734|zinc finger and SCAN domain containing 5B	NM_133204|Zscan5b|170734|zinc finger and SCAN domain containing 5B
mm9_v1_chr17_+_19051285_19051285	0.182313	HOX{A4,D4}.p2	NM_001104549|Vmn2r97|627367|vomeronasal 2, receptor 97
mm9_v1_chr8_-_108092197_108092197	0.181177	HOX{A4,D4}.p2	BC079902|Agrp|11604|agouti related protein	NM_007427|Agrp|11604|agouti related protein
mm9_v1_chr18_+_24796993_24796998	0.178054	HOX{A4,D4}.p2	AK213520|Elp2|58523|elongation protein 2 homolog (S. cerevisiae)
mm9_v1_chr13_-_21494493_21494508	0.176745	HOX{A4,D4}.p2	AK220177|Zkscan3|72739|zinc finger with KRAB and SCAN domains 3
mm9_v1_chr7_+_138703898_138703948	0.176053	HOX{A4,D4}.p2	AK088534|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK138004|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	NM_009774|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	U67327|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	BC086790|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)	AK190618|Bub3|12237|budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae)
mm9_v1_chr5_+_115729684_115729726	0.175278	HOX{A4,D4}.p2	AK014348|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK045993|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK050334|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	BC052345|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK007496|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	NM_026504|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)	AK009825|Coq5|52064|coenzyme Q5 homolog, methyltransferase (yeast)
mm9_v1_chr3_-_107877497_107877529	0.174667	HOX{A4,D4}.p2	AK192664|Ampd2|109674|adenosine monophosphate deaminase 2
mm9_v1_chr6_-_14705104_14705273	0.173828	HOX{A4,D4}.p2	AK084719|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	BC109007|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	BC109008|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	AK084518|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A	NM_080464|Ppp1r3a|140491|protein phosphatase 1, regulatory (inhibitor) subunit 3A
mm9_v1_chr11_-_102152310_102152512	0.173619	HOX{A4,D4}.p2	AK218190|Atxn7l3|217218|ataxin 7-like 3	AK053165|Atxn7l3|217218|ataxin 7-like 3
mm9_v1_chr9_-_44495469_44495477	0.173084	HOX{A4,D4}.p2	BC025451|Phldb1|102693|pleckstrin homology-like domain, family B, member 1
mm9_v1_chr18_+_37514924_37514931	0.171724	HOX{A4,D4}.p2	AY013790|Pcdhb8|93879|protocadherin beta 8	BC116268|Pcdhb8|93879|protocadherin beta 8	BC127160|Pcdhb8|93879|protocadherin beta 8	NM_053133|Pcdhb8|93879|protocadherin beta 8	BC116269|Pcdhb8|93879|protocadherin beta 8
mm9_v1_chr8_-_35153699_35153753	0.170042	HOX{A4,D4}.p2	
mm9_v1_chr9_+_88734001_88734001	0.1685	HOX{A4,D4}.p2	NM_001177858|Trim43c|666731|tripartite motif-containing 43C
mm9_v1_chr11_+_82577835_82577869	0.168487	HOX{A4,D4}.p2	AK008475|Zfp830|66983|zinc finger protein 830	AK132497|Zfp830|66983|zinc finger protein 830	NM_025884|Zfp830|66983|zinc finger protein 830	AK148058|Zfp830|66983|zinc finger protein 830	AK050043|Zfp830|66983|zinc finger protein 830	AK010353|Zfp830|66983|zinc finger protein 830	AK167656|Zfp830|66983|zinc finger protein 830	BC024340|Zfp830|66983|zinc finger protein 830	AK168417|Zfp830|66983|zinc finger protein 830	AK017640|Zfp830|66983|zinc finger protein 830
mm9_v1_chr13_+_51942043_51942063	0.16775	HOX{A4,D4}.p2	NM_011817|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK002237|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AK007410|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AB021884|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	BC001989|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma	AF055638|Gadd45g|23882|growth arrest and DNA-damage-inducible 45 gamma
mm9_v1_chr17_+_18222020_18222020	0.1672	HOX{A4,D4}.p2	NM_001104540|Vmn2r91|665210|vomeronasal 2, receptor 91
mm9_v1_chr13_+_27351357_27351420	0.166494	HOX{A4,D4}.p2	AK005474|Prl3a1|67000|prolactin family 3, subfamily a, member 1	NM_025896|Prl3a1|67000|prolactin family 3, subfamily a, member 1	AK005567|Prl3a1|67000|prolactin family 3, subfamily a, member 1	AF525154|Prl3a1|67000|prolactin family 3, subfamily a, member 1	BC100334|Prl3a1|67000|prolactin family 3, subfamily a, member 1
mm9_v1_chr9_+_7445821_7445879	0.161643	HOX{A4,D4}.p2	NM_010809|Mmp3|17392|matrix metallopeptidase 3	X63162|Mmp3|17392|matrix metallopeptidase 3	AK148467|Mmp3|17392|matrix metallopeptidase 3	BC006725|Mmp3|17392|matrix metallopeptidase 3	X66402|Mmp3|17392|matrix metallopeptidase 3
mm9_v1_chr17_-_35975075_35975143	0.159639	HOX{A4,D4}.p2	X04663|Tubb5|22154|tubulin, beta 5
mm9_v1_chr2_+_180716817_180716845	0.159177	HOX{A4,D4}.p2	
mm9_v1_chr14_+_48283430_48283453	0.156821	HOX{A4,D4}.p2	NM_008477|Ktn1|16709|kinectin 1	L43326|Ktn1|16709|kinectin 1
mm9_v1_chr17_-_45708739_45708860	0.156326	HOX{A4,D4}.p2	AK177268|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK178129|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK179913|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK180968|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK190429|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK196204|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1	AK218770|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr17_-_26005680_26005704	0.156288	HOX{A4,D4}.p2	AK020614|Fam195a|68241|family with sequence similarity 195, member A	AK003564|Fam195a|68241|family with sequence similarity 195, member A	NM_026633|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr3_-_121518046_121518134	0.154842	HOX{A4,D4}.p2	BC054446|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK153298|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK004660|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK081952|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	AK144060|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	BC009119|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3	NM_008991|Abcd3|19299|ATP-binding cassette, sub-family D (ALD), member 3
mm9_v1_chr6_-_137118238_137118241	0.154407	HOX{A4,D4}.p2	NM_001164212|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	NM_001164214|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr5_+_88203590_88203597	0.153908	HOX{A4,D4}.p2	AK164738|Csn1s2a|12993|casein alpha s2-like A	D10215|Csn1s2a|12993|casein alpha s2-like A	NM_007785|Csn1s2a|12993|casein alpha s2-like A	AK142688|Csn1s2a|12993|casein alpha s2-like A
mm9_v1_chr1_-_53244460_53244460	0.153812	HOX{A4,D4}.p2	AK006101|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene	NM_027070|1700019A02Rik|69397|RIKEN cDNA 1700019A02 gene
mm9_v1_chr15_+_10288309_10288333	0.153407	HOX{A4,D4}.p2	BC141248|Agxt2|268782|alanine-glyoxylate aminotransferase 2	BC145576|Agxt2|268782|alanine-glyoxylate aminotransferase 2	AK149538|Agxt2|268782|alanine-glyoxylate aminotransferase 2	NM_001031851|Agxt2|268782|alanine-glyoxylate aminotransferase 2
mm9_v1_chr11_-_23419100_23419194	0.150936	HOX{A4,D4}.p2	AK007052|1700093K21Rik|67358|RIKEN cDNA 1700093K21 gene	BC049567|1700093K21Rik|67358|RIKEN cDNA 1700093K21 gene	NM_026105|1700093K21Rik|67358|RIKEN cDNA 1700093K21 gene
mm9_v1_chr11_+_98671106_98671158	0.150671	HOX{A4,D4}.p2	NM_138660|Casc3|192160|cancer susceptibility candidate 3	AF526276|Casc3|192160|cancer susceptibility candidate 3
mm9_v1_chr1_+_74648028_74648212	0.148591	HOX{A4,D4}.p2	NM_175031|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK029842|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC043103|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	AK007188|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC049721|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)	BC058698|Stk36|269209|serine/threonine kinase 36 (fused homolog, Drosophila)
mm9_v1_chr3_+_57229362_57229380	0.148414	HOX{A4,D4}.p2	AK148484|Tm4sf4|229302|transmembrane 4 superfamily member 4	AK165731|Tm4sf4|229302|transmembrane 4 superfamily member 4	BC010814|Tm4sf4|229302|transmembrane 4 superfamily member 4
mm9_v1_chr6_-_56312803_56312803	0.148039	HOX{A4,D4}.p2	AK050499|Pde1c|18575|phosphodiesterase 1C	NM_001159960|Pde1c|18575|phosphodiesterase 1C
mm9_v1_chr6_+_106719113_106719221	0.147981	HOX{A4,D4}.p2	AK135791|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK010662|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AB063106|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK152739|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	BC031764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	NM_027296|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK011764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK166804|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1	AK139764|Trnt1|70047|tRNA nucleotidyl transferase, CCA-adding, 1
mm9_v1_chr4_+_33219530_33219530	0.146199	HOX{A4,D4}.p2	AF024620|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	NM_008075|Gabrr1|14408|gamma-aminobutyric acid (GABA) C receptor, subunit rho 1
mm9_v1_chr13_+_55885928_55886022	0.146048	HOX{A4,D4}.p2	BC089518|Catsper3|76856|cation channel, sperm associated 3	AK014942|Catsper3|76856|cation channel, sperm associated 3	NM_029772|Catsper3|76856|cation channel, sperm associated 3	AY263400|Catsper3|76856|cation channel, sperm associated 3	HM179540|Catsper3|76856|cation channel, sperm associated 3	HM179541|Catsper3|76856|cation channel, sperm associated 3
mm9_v1_chr11_+_98667577_98667599	0.145606	HOX{A4,D4}.p2	AK031902|Msl1|74026|male-specific lethal 1 homolog (Drosophila)
mm9_v1_chr6_-_137118197_137118219	0.142624	HOX{A4,D4}.p2	AK028025|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor	AK133734|Rerg|232441|RAS-like, estrogen-regulated, growth-inhibitor
mm9_v1_chr5_-_147032490_147032561	0.140835	HOX{A4,D4}.p2	AK017576|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK029912|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK150269|Rnf6|74132|ring finger protein (C3H2C3 type) 6	AK152106|Rnf6|74132|ring finger protein (C3H2C3 type) 6
mm9_v1_chr13_+_8952108_8952122	0.140635	HOX{A4,D4}.p2	AK029364|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	AK081319|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	AY263178|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	NM_177197|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	BC099586|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	BC125310|Idi2|320581|isopentenyl-diphosphate delta isomerase 2	BC138100|Idi2|320581|isopentenyl-diphosphate delta isomerase 2
mm9_v1_chr11_-_79955625_79955678	0.140297	HOX{A4,D4}.p2	AK003325|1110002N22Rik|68550|RIKEN cDNA 1110002N22 gene	AK146639|1110002N22Rik|68550|RIKEN cDNA 1110002N22 gene	NM_183275|1110002N22Rik|68550|RIKEN cDNA 1110002N22 gene
mm9_v1_chr7_-_14574936_14574936	0.135941	HOX{A4,D4}.p2	NM_001101534|Sult2a4|434121|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 4
mm9_v1_chr2_-_66512442_66512445	0.13544	HOX{A4,D4}.p2	AK004093|Scn7a|20272|sodium channel, voltage-gated, type VII, alpha
mm9_v1_chr9_-_50363242_50363242	0.135423	HOX{A4,D4}.p2	NM_133217|Bco2|170752|beta-carotene oxygenase 2
mm9_v1_chr3_+_57229331_57229351	0.135026	HOX{A4,D4}.p2	NM_145539|Tm4sf4|229302|transmembrane 4 superfamily member 4
mm9_v1_chr6_+_123652838_123652838	0.133099	HOX{A4,D4}.p2	NM_001104638|Vmn2r23|435916|vomeronasal 2, receptor 23
mm9_v1_chrX_+_34826611_34826611	0.132275	HOX{A4,D4}.p2	BC049546|Rhox2b|100039913|reproductive homeobox 2B	NM_001099316|Rhox2b|100039913|reproductive homeobox 2B
mm9_v1_chr6_+_24683244_24683306	0.132001	HOX{A4,D4}.p2	AK016575|Hyal6|74409|hyaluronoglucosaminidase 6	AK030190|Hyal6|74409|hyaluronoglucosaminidase 6	NM_028920|Hyal6|74409|hyaluronoglucosaminidase 6	AK029715|Hyal6|74409|hyaluronoglucosaminidase 6	BC151178|Hyal6|74409|hyaluronoglucosaminidase 6	BC151179|Hyal6|74409|hyaluronoglucosaminidase 6
mm9_v1_chr10_+_52111413_52111541	0.131496	HOX{A4,D4}.p2	AK017780|Nepn|66650|nephrocan	AY938536|Nepn|66650|nephrocan	NM_025684|Nepn|66650|nephrocan	AK017656|Nepn|66650|nephrocan	BC132046|Nepn|66650|nephrocan	BC132048|Nepn|66650|nephrocan	AK017842|Nepn|66650|nephrocan
mm9_v1_chr11_-_120012597_120012600	0.131093	HOX{A4,D4}.p2	BC088811|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chr3_+_88420058_88420079	0.129824	HOX{A4,D4}.p2	AK158232|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr15_+_82000246_82000509	0.128529	HOX{A4,D4}.p2	BC023333|Srebf2|20788|sterol regulatory element binding factor 2
mm9_v1_chr8_+_71317827_71317912	0.126688	HOX{A4,D4}.p2	AK040574|Ints10|70885|integrator complex subunit 10	AK047093|Ints10|70885|integrator complex subunit 10	AK014939|Ints10|70885|integrator complex subunit 10	NM_027590|Ints10|70885|integrator complex subunit 10	AK147743|Ints10|70885|integrator complex subunit 10	AK169819|Ints10|70885|integrator complex subunit 10	AK030974|Ints10|70885|integrator complex subunit 10	BC031923|Ints10|70885|integrator complex subunit 10	AK083331|Ints10|70885|integrator complex subunit 10	AK034498|Ints10|70885|integrator complex subunit 10
mm9_v1_chr12_+_120084801_120084801	0.125939	HOX{A4,D4}.p2	AK053093|Sp8|320145|trans-acting transcription factor 8	NM_177082|Sp8|320145|trans-acting transcription factor 8
mm9_v1_chr5_+_45884612_45884734	0.125829	HOX{A4,D4}.p2	BC016536|Lap3|66988|leucine aminopeptidase 3	NM_024434|Lap3|66988|leucine aminopeptidase 3	AK089023|Lap3|66988|leucine aminopeptidase 3	AF334160|Lap3|66988|leucine aminopeptidase 3	AK010502|Lap3|66988|leucine aminopeptidase 3	AK002819|Lap3|66988|leucine aminopeptidase 3	CT010237|Lap3|66988|leucine aminopeptidase 3	CT010301|Lap3|66988|leucine aminopeptidase 3	AK005334|Lap3|66988|leucine aminopeptidase 3	AK010384|Lap3|66988|leucine aminopeptidase 3	AK011604|Lap3|66988|leucine aminopeptidase 3	AK169032|Lap3|66988|leucine aminopeptidase 3	AK008600|Lap3|66988|leucine aminopeptidase 3	AK166958|Lap3|66988|leucine aminopeptidase 3
mm9_v1_chr8_+_124119866_124119959	0.125054	HOX{A4,D4}.p2	AK199755|Map1lc3b|67443|microtubule-associated protein 1 light chain 3 beta
mm9_v1_chr2_+_69877182_69877182	0.124887	HOX{A4,D4}.p2	NM_177376|Myo3b|329421|myosin IIIB
mm9_v1_chr6_-_129863199_129863241	0.122476	HOX{A4,D4}.p2	BC120550|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	BC137708|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	AF247643|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	NM_008463|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5	U10091|Klra5|16636|killer cell lectin-like receptor, subfamily A, member 5
mm9_v1_chr6_+_113573980_113574047	0.122425	HOX{A4,D4}.p2	AK159238|Vhl|22346|von Hippel-Lindau tumor suppressor	U12570|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171604|Vhl|22346|von Hippel-Lindau tumor suppressor	AK171264|Vhl|22346|von Hippel-Lindau tumor suppressor	NM_009507|Vhl|22346|von Hippel-Lindau tumor suppressor	S76748|Vhl|22346|von Hippel-Lindau tumor suppressor	BC052417|Vhl|22346|von Hippel-Lindau tumor suppressor	AK161408|Vhl|22346|von Hippel-Lindau tumor suppressor
mm9_v1_chr2_+_130250035_130250123	0.120135	HOX{A4,D4}.p2	NM_030559|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK169694|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK162984|Vps16|80743|vacuolar protein sorting 16 (yeast)	AK049872|Vps16|80743|vacuolar protein sorting 16 (yeast)	AB056721|Vps16|80743|vacuolar protein sorting 16 (yeast)
mm9_v1_chr11_+_6460185_6460185	0.119049	HOX{A4,D4}.p2	AK169727|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)	NM_001190344|Ccm2|216527|cerebral cavernous malformation 2 homolog (human)
mm9_v1_chr5_-_115791153_115791197	0.118667	HOX{A4,D4}.p2	BC021775|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	AK034326|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	NM_029645|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)	AK008080|Gatc|384281|glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial)
mm9_v1_chr11_-_86517662_86517713	0.117769	HOX{A4,D4}.p2	AK167527|Cltc|67300|clathrin, heavy polypeptide (Hc)
mm9_v1_chr11_-_30168142_30168145	0.117498	HOX{A4,D4}.p2	BC092544|Spnb2|20742|spectrin beta 2
mm9_v1_chr9_+_88475873_88475994	0.116739	HOX{A4,D4}.p2	AK145647|Trim43a|547109|tripartite motif-containing 43A	NM_001034906|Trim43a|547109|tripartite motif-containing 43A	AK166678|Trim43a|547109|tripartite motif-containing 43A	BC141236|Trim43a|547109|tripartite motif-containing 43A
mm9_v1_chrX_-_46641408_46641425	0.116182	HOX{A4,D4}.p2	AK028343|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK034058|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	AK041822|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2	NM_145951|Enox2|209224|ecto-NOX disulfide-thiol exchanger 2
mm9_v1_chr8_+_48072271_48072307	0.115898	HOX{A4,D4}.p2	AK046881|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK046797|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	NM_177304|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079642|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK079352|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	AK038460|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6	BC096376|Enpp6|320981|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm9_v1_chr6_-_129976943_129976977	0.1155	HOX{A4,D4}.p2	BC116377|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	BC116822|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	BC116824|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	NM_008464|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	U10092|Klra6|16637|killer cell lectin-like receptor, subfamily A, member 6	AF288378|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19	NM_053154|Klra19|93971|killer cell lectin-like receptor, subfamily A, member 19
mm9_v1_chr6_+_41988391_41988406	0.115189	HOX{A4,D4}.p2	BC104305|Sva|20939|seminal vesicle antigen	NM_009299|Sva|20939|seminal vesicle antigen	BC104304|Sva|20939|seminal vesicle antigen	M94179|Sva|20939|seminal vesicle antigen
mm9_v1_chr19_+_43764248_43764298	0.114896	HOX{A4,D4}.p2	AK045130|Entpd7|93685|ectonucleoside triphosphate diphosphohydrolase 7
mm9_v1_chr15_+_25901865_25901876	0.112528	HOX{A4,D4}.p2	AK088619|Fam134b|66270|family with sequence similarity 134, member B
mm9_v1_chr17_-_26005645_26005674	0.111495	HOX{A4,D4}.p2	BC024332|Fam195a|68241|family with sequence similarity 195, member A
mm9_v1_chr17_-_29052264_29052268	0.11129	HOX{A4,D4}.p2	BC117930|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	AK033585|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene	NM_172450|4930539E08Rik|207819|RIKEN cDNA 4930539E08 gene
mm9_v1_chr17_-_71948041_71948067	0.107917	HOX{A4,D4}.p2	AK045842|Trmt61b|68789|tRNA methyltransferase 61 homolog B (S. cerevisiae)
mm9_v1_chr4_-_62131905_62131926	0.107578	HOX{A4,D4}.p2	AF274321|Wdr31|71354|WD repeat domain 31	NM_023597|Wdr31|71354|WD repeat domain 31	BC037102|Wdr31|71354|WD repeat domain 31	AK017259|Wdr31|71354|WD repeat domain 31	AK141026|Wdr31|71354|WD repeat domain 31
mm9_v1_chr6_-_106698941_106699030	0.106808	HOX{A4,D4}.p2	AK138923|Il5ra|16192|interleukin 5 receptor, alpha	D90205|Il5ra|16192|interleukin 5 receptor, alpha	NM_008370|Il5ra|16192|interleukin 5 receptor, alpha
mm9_v1_chr9_-_7835107_7835268	0.106047	HOX{A4,D4}.p2	BC145985|Birc2|11797|baculoviral IAP repeat-containing 2	NM_007465|Birc2|11797|baculoviral IAP repeat-containing 2	U88909|Birc2|11797|baculoviral IAP repeat-containing 2	BC033480|Birc2|11797|baculoviral IAP repeat-containing 2
mm9_v1_chr16_+_36184297_36184316	0.105685	HOX{A4,D4}.p2	AK089257|Gm5483|433016|predicted gene 5483	NM_001082547|Gm5483|433016|predicted gene 5483	BC147081|Gm5483|433016|predicted gene 5483	BC147082|Gm5483|433016|predicted gene 5483
mm9_v1_chr6_-_23600205_23600304	0.105027	HOX{A4,D4}.p2	BC116423|Rnf133|386611|ring finger protein 133	BC116424|Rnf133|386611|ring finger protein 133	AK028082|Rnf133|386611|ring finger protein 133	NM_198251|Rnf133|386611|ring finger protein 133
mm9_v1_chr2_+_78710638_78710757	0.105017	HOX{A4,D4}.p2	AF003346|Ube2e3|22193|ubiquitin-conjugating enzyme E2E 3, UBC4/5 homolog (yeast)
mm9_v1_chr1_+_145586478_145586478	0.10473	HOX{A4,D4}.p2	AK005853|Glrx2|69367|glutaredoxin 2 (thioltransferase)	NM_001038593|Glrx2|69367|glutaredoxin 2 (thioltransferase)
mm9_v1_chr6_-_52590192_52590282	0.102932	HOX{A4,D4}.p2	AK078175|Hibadh|58875|3-hydroxyisobutyrate dehydrogenase
mm9_v1_chr3_+_88639149_88639197	0.101861	HOX{A4,D4}.p2	NM_027389|Gon4l|76022|gon-4-like (C.elegans)	AK147575|Gon4l|76022|gon-4-like (C.elegans)	BC037148|Gon4l|76022|gon-4-like (C.elegans)
mm9_v1_chr6_-_122232849_122232899	0.101704	HOX{A4,D4}.p2	BC101953|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	BC103546|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	BC103547|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	BC103548|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	AF097357|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	NM_016970|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1	AJ010751|Klrg1|50928|killer cell lectin-like receptor subfamily G, member 1
mm9_v1_chr6_-_129050920_129050933	0.100261	HOX{A4,D4}.p2	BC051091|Clec2e|232409|C-type lectin domain family 2, member e	NM_153506|Clec2e|232409|C-type lectin domain family 2, member e
mm9_v1_chr2_-_126609172_126609195	0.0998944	HOX{A4,D4}.p2	BC061020|Usp50|75083|ubiquitin specific peptidase 50	BC051141|Usp50|75083|ubiquitin specific peptidase 50	AK015766|Usp50|75083|ubiquitin specific peptidase 50	AK007018|Usp50|75083|ubiquitin specific peptidase 50	NM_029163|Usp50|75083|ubiquitin specific peptidase 50
mm9_v1_chrX_+_35688564_35688695	0.0996974	HOX{A4,D4}.p2	AK004245|Atp1b4|67821|ATPase, (Na+)/K+ transporting, beta 4 polypeptide
mm9_v1_chr5_-_130214385_130214385	0.0986528	HOX{A4,D4}.p2	NM_028826|Sept14|74222|septin 14
mm9_v1_chr4_-_134409199_134409236	0.0981495	HOX{A4,D4}.p2	BC042733|Tmem57|66146|transmembrane protein 57	BC044802|Tmem57|66146|transmembrane protein 57	BC037192|Tmem57|66146|transmembrane protein 57	BC019186|Tmem57|66146|transmembrane protein 57	AK020354|Tmem57|66146|transmembrane protein 57
mm9_v1_chr2_+_23062995_23062995	0.097874	HOX{A4,D4}.p2	AK016475|4931423N10Rik|70981|RIKEN cDNA 4931423N10 gene	NM_027635|4931423N10Rik|70981|RIKEN cDNA 4931423N10 gene
mm9_v1_chr10_-_58138401_58138443	0.0977444	HOX{A4,D4}.p2	BC068315|Edar|13608|ectodysplasin-A receptor	AF160502|Edar|13608|ectodysplasin-A receptor	NM_010100|Edar|13608|ectodysplasin-A receptor
mm9_v1_chr3_-_95558736_95558899	0.0962738	HOX{A4,D4}.p2	AK187935|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK164825|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK088675|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	BC147501|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK011540|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	BC008995|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK168075|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK142685|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK080690|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	AK164589|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163617|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163618|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_001163619|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)	NM_027931|Tars2|71807|threonyl-tRNA synthetase 2, mitochondrial (putative)
mm9_v1_chr16_+_92498378_92498391	0.0960936	HOX{A4,D4}.p2	BC075706|Clic6|209195|chloride intracellular channel 6	AK077599|Clic6|209195|chloride intracellular channel 6	NM_172469|Clic6|209195|chloride intracellular channel 6
mm9_v1_chr2_-_157835086_157835095	0.09505	HOX{A4,D4}.p2	AF332067|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	AF332068|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	BC053067|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)	NM_029282|Tti1|75425|Tel2 interacting protein 1 homolog (S. pombe)
mm9_v1_chr7_-_149846916_149846939	0.0936982	HOX{A4,D4}.p2	NM_001122736|Igf2|16002|insulin-like growth factor 2
mm9_v1_chr5_+_138613248_138613363	0.0930879	HOX{A4,D4}.p2	AK031638|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	NM_021392|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	AK165187|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1	BC011174|Ap4m1|11781|adaptor-related protein complex AP-4, mu 1
mm9_v1_chr7_-_31348148_31348229	0.0909173	HOX{A4,D4}.p2	AK002440|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK007621|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	AK006284|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC024347|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	NM_025498|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)	BC081443|Psenen|66340|presenilin enhancer 2 homolog (C. elegans)
mm9_v1_chr8_-_3625510_3625544	0.090711	HOX{A4,D4}.p2	BC014694|Pcp2|18545|Purkinje cell protein 2 (L7)	BC028982|Pcp2|18545|Purkinje cell protein 2 (L7)	BC024853|Pcp2|18545|Purkinje cell protein 2 (L7)	EU164759|Pcp2|18545|Purkinje cell protein 2 (L7)	NM_001129803|Pcp2|18545|Purkinje cell protein 2 (L7)
mm9_v1_chrX_+_106029995_106030017	0.0902586	HOX{A4,D4}.p2	AK007586|2810403D21Rik|69964|RIKEN cDNA 2810403D21 gene	AK155344|2810403D21Rik|69964|RIKEN cDNA 2810403D21 gene	AK012972|2810403D21Rik|69964|RIKEN cDNA 2810403D21 gene
mm9_v1_chr8_+_97835414_97835512	0.090239	HOX{A4,D4}.p2	NM_199455|Tepp|73407|testis, prostate and placenta expressed	BC104382|Tepp|73407|testis, prostate and placenta expressed	BC104383|Tepp|73407|testis, prostate and placenta expressed	BC087870|Tepp|73407|testis, prostate and placenta expressed	AK006802|Tepp|73407|testis, prostate and placenta expressed	NM_028532|Tepp|73407|testis, prostate and placenta expressed
mm9_v1_chr10_-_58684594_58684594	0.0870425	HOX{A4,D4}.p2	AK076569|Sept10|103080|septin 10	NM_001024910|Sept10|103080|septin 10	NM_001024911|Sept10|103080|septin 10
mm9_v1_chr18_+_60371711_60371757	0.086325	HOX{A4,D4}.p2	AK149556|Gm4951|240327|predicted gene 4951	NM_001033767|Gm4951|240327|predicted gene 4951	AK149583|Gm4951|240327|predicted gene 4951
mm9_v1_chr15_+_78872314_78872314	0.0850058	HOX{A4,D4}.p2	BC131950|Galr3|14429|galanin receptor 3	BC131952|Galr3|14429|galanin receptor 3	NM_015738|Galr3|14429|galanin receptor 3
mm9_v1_chr6_-_73419585_73419660	0.0831334	HOX{A4,D4}.p2	AK005631|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	BC048456|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	AK016460|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene	NM_025737|4931417E11Rik|66740|RIKEN cDNA 4931417E11 gene
mm9_v1_chr18_+_12287232_12287358	0.0830896	HOX{A4,D4}.p2	AK167309|Riok3|66878|RIO kinase 3 (yeast)	AK004748|Riok3|66878|RIO kinase 3 (yeast)	AK134327|Riok3|66878|RIO kinase 3 (yeast)	AK170882|Riok3|66878|RIO kinase 3 (yeast)	AK054308|Riok3|66878|RIO kinase 3 (yeast)	BC033271|Riok3|66878|RIO kinase 3 (yeast)	AK131635|Riok3|66878|RIO kinase 3 (yeast)	AK147074|Riok3|66878|RIO kinase 3 (yeast)	NM_024182|Riok3|66878|RIO kinase 3 (yeast)
mm9_v1_chr2_-_75776467_75776587	0.0825689	HOX{A4,D4}.p2	AK147134|Ttc30b|72421|tetratricopeptide repeat domain 30B	AK011097|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151060|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC151184|Ttc30b|72421|tetratricopeptide repeat domain 30B	NM_028235|Ttc30b|72421|tetratricopeptide repeat domain 30B	BC157929|Ttc30b|72421|tetratricopeptide repeat domain 30B
mm9_v1_chr14_-_14953416_14953474	0.0805652	HOX{A4,D4}.p2	BC006869|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	NM_025550|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK002343|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AK010287|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	AJ252147|Psmd6|66413|proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
mm9_v1_chr7_-_36432389_36432534	0.0786315	HOX{A4,D4}.p2	AF161074|Pdcd5|56330|programmed cell death 5	BC056167|Pdcd5|56330|programmed cell death 5	BC048476|Pdcd5|56330|programmed cell death 5	AK007297|Pdcd5|56330|programmed cell death 5	BC092092|Pdcd5|56330|programmed cell death 5	NM_019746|Pdcd5|56330|programmed cell death 5	AK008632|Pdcd5|56330|programmed cell death 5
mm9_v1_chr13_-_77230519_77230547	0.0785712	HOX{A4,D4}.p2	BC083095|Ankrd32|105377|ankyrin repeat domain 32
mm9_v1_chr13_+_107737175_107737270	0.0769516	HOX{A4,D4}.p2	NM_025447|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078401|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	BC019799|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK146188|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK011544|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK007759|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK015145|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK078186|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	AK161333|Dimt1|66254|DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)
mm9_v1_chr2_+_24146715_24146723	0.0763603	HOX{A4,D4}.p2	AY071844|Il1f10|215274|interleukin 1 family, member 10	NM_153077|Il1f10|215274|interleukin 1 family, member 10	BC107312|Il1f10|215274|interleukin 1 family, member 10	BC107311|Il1f10|215274|interleukin 1 family, member 10
mm9_v1_chr1_-_166865638_166865652	0.0727755	HOX{A4,D4}.p2	U15607|Xcl1|16963|chemokine (C motif) ligand 1	BC062249|Xcl1|16963|chemokine (C motif) ligand 1	D43769|Xcl1|16963|chemokine (C motif) ligand 1	NM_008510|Xcl1|16963|chemokine (C motif) ligand 1	AK079820|Xcl1|16963|chemokine (C motif) ligand 1
mm9_v1_chr11_-_59025422_59025528	0.0724628	HOX{A4,D4}.p2	AK211704|Arf1|11840|ADP-ribosylation factor 1	AK195749|Arf1|11840|ADP-ribosylation factor 1
mm9_v1_chr8_+_70047752_70047752	0.0720253	HOX{A4,D4}.p2	AK077364|Nat3|17962|N-acetyltransferase 3	NM_008674|Nat3|17962|N-acetyltransferase 3
mm9_v1_chr19_+_36908682_36908797	0.071411	HOX{A4,D4}.p2	NM_001163635|Tnks2|74493|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
mm9_v1_chr2_-_48804794_48804803	0.0710236	HOX{A4,D4}.p2	AK145454|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr14_-_56830194_56830253	0.0703821	HOX{A4,D4}.p2	X12823|Gzmf|14943|granzyme F	BC145435|Gzmf|14943|granzyme F	BC100311|Gzmf|14943|granzyme F	NM_010374|Gzmf|14943|granzyme F	J03257|Gzmf|14943|granzyme F
mm9_v1_chr11_-_99442304_99442329	0.0698513	HOX{A4,D4}.p2	BC147095|Krtap1-5|69664|keratin associated protein 1-5	BC147096|Krtap1-5|69664|keratin associated protein 1-5	AK009782|Krtap1-5|69664|keratin associated protein 1-5	NM_027157|Krtap1-5|69664|keratin associated protein 1-5
mm9_v1_chr5_+_22988226_22988243	0.0686244	HOX{A4,D4}.p2	
mm9_v1_chr8_-_44750913_44750913	0.0684713	HOX{A4,D4}.p2	NM_145745|Adam34|252866|a disintegrin and metallopeptidase domain 34
mm9_v1_chr16_-_98169926_98169967	0.0682258	HOX{A4,D4}.p2	AK017406|Zfp295|114565|zinc finger protein 295	AK084920|Zfp295|114565|zinc finger protein 295
mm9_v1_chr4_-_63156984_63157036	0.0666971	HOX{A4,D4}.p2	AY739114|Whrn|73750|whirlin	AY739115|Whrn|73750|whirlin	AY739116|Whrn|73750|whirlin	AY739117|Whrn|73750|whirlin	AY739118|Whrn|73750|whirlin	AY739119|Whrn|73750|whirlin	AY739120|Whrn|73750|whirlin	NM_001008791|Whrn|73750|whirlin	NM_001008792|Whrn|73750|whirlin	NM_001008793|Whrn|73750|whirlin	NM_001008794|Whrn|73750|whirlin	NM_001008795|Whrn|73750|whirlin	NM_001008796|Whrn|73750|whirlin	NM_028640|Whrn|73750|whirlin	AK157955|Whrn|73750|whirlin
mm9_v1_chr13_+_27334298_27334313	0.0662529	HOX{A4,D4}.p2	AK005542|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK005543|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK131667|Prl3b1|18776|prolactin family 3, subfamily b, member 1	M14647|Prl3b1|18776|prolactin family 3, subfamily b, member 1	NM_008865|Prl3b1|18776|prolactin family 3, subfamily b, member 1	AK167483|Prl3b1|18776|prolactin family 3, subfamily b, member 1	BC099386|Prl3b1|18776|prolactin family 3, subfamily b, member 1
mm9_v1_chr2_-_35835311_35835317	0.0661623	HOX{A4,D4}.p2	AK016881|Ttll11|74410|tubulin tyrosine ligase-like family, member 11
mm9_v1_chr5_-_137971968_137971994	0.0660162	HOX{A4,D4}.p2	U34960|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2	BC029077|Gnb2|14693|guanine nucleotide binding protein (G protein), beta 2
mm9_v1_chr6_+_66986592_66986609	0.0657025	HOX{A4,D4}.p2	AK029473|E230016M11Rik|320172|RIKEN cDNA E230016M11 gene
mm9_v1_chr14_+_37881214_37881259	0.0655362	HOX{A4,D4}.p2	BC037728|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044611|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	AK044383|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	NM_173418|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	BC057628|Lrit2|239038|leucine-rich repeat, immunoglobulin-like and transmembrane domains 2
mm9_v1_chr2_-_77008655_77008700	0.0651873	HOX{A4,D4}.p2	AK045498|Ccdc141|545428|coiled-coil domain containing 141	AK011952|Ccdc141|545428|coiled-coil domain containing 141	AK053175|Ccdc141|545428|coiled-coil domain containing 141	NM_001025576|Ccdc141|545428|coiled-coil domain containing 141	AK041121|Ccdc141|545428|coiled-coil domain containing 141
mm9_v1_chr11_-_32427563_32427578	0.0644056	HOX{A4,D4}.p2	AK015057|Efcab9|69306|EF-hand calcium binding domain 9	AK161300|Efcab9|69306|EF-hand calcium binding domain 9	BC087911|Efcab9|69306|EF-hand calcium binding domain 9	NM_027031|Efcab9|69306|EF-hand calcium binding domain 9	AK005716|Efcab9|69306|EF-hand calcium binding domain 9
mm9_v1_chr18_+_74442753_74442835	0.06279	HOX{A4,D4}.p2	NM_028948|Ccdc11|74453|coiled-coil domain containing 11	AK016821|Ccdc11|74453|coiled-coil domain containing 11	AK162352|Ccdc11|74453|coiled-coil domain containing 11	BC099500|Ccdc11|74453|coiled-coil domain containing 11
mm9_v1_chr11_-_120012520_120012596	0.062782	HOX{A4,D4}.p2	AK007977|Slc38a10|72055|solute carrier family 38, member 10	AK084120|Slc38a10|72055|solute carrier family 38, member 10	AK032245|Slc38a10|72055|solute carrier family 38, member 10
mm9_v1_chrX_-_34750999_34751035	0.0613128	HOX{A4,D4}.p2	AK131663|Gm9|194854|predicted gene 9	BC048624|Gm9|194854|predicted gene 9	AK145837|Gm9|194854|predicted gene 9	NM_001033234|Gm9|194854|predicted gene 9
mm9_v1_chr16_-_13869955_13869977	0.0608375	HOX{A4,D4}.p2	AK075829|Pdxdc1|94184|pyridoxal-dependent decarboxylase domain containing 1
mm9_v1_chr3_+_108060061_108060131	0.0608244	HOX{A4,D4}.p2	AK160741|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160530|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK160550|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AK161680|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC007181|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC010709|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC083342|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	BC108368|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5	AF019661|Psma5|26442|proteasome (prosome, macropain) subunit, alpha type 5
mm9_v1_chr11_+_68829412_68829631	0.0607101	HOX{A4,D4}.p2	NM_001013256|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	NM_001143790|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC072625|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC066078|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK145919|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK165906|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147495|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	BC147497|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK044055|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK030876|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene	AK038651|1500010J02Rik|68964|RIKEN cDNA 1500010J02 gene
mm9_v1_chr10_+_88194103_88194147	0.0595239	HOX{A4,D4}.p2	AK088330|Arl1|104303|ADP-ribosylation factor-like 1	AK009226|Arl1|104303|ADP-ribosylation factor-like 1	BC116894|Arl1|104303|ADP-ribosylation factor-like 1	BC116896|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chr8_+_26750755_26750755	0.0591875	HOX{A4,D4}.p2	NM_001081269|Whsc1l1|234135|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm9_v1_chr10_-_78560301_78560348	0.0589156	HOX{A4,D4}.p2	BC082302|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	AK148309|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene	NM_001004362|2610008E11Rik|72128|RIKEN cDNA 2610008E11 gene
mm9_v1_chr6_-_30340952_30341009	0.0582401	HOX{A4,D4}.p2	BC037445|Zc3hc1|232679|zinc finger, C3HC type 1	AJ537495|Zc3hc1|232679|zinc finger, C3HC type 1	AK151694|Zc3hc1|232679|zinc finger, C3HC type 1	BC050141|Zc3hc1|232679|zinc finger, C3HC type 1	AK088527|Zc3hc1|232679|zinc finger, C3HC type 1	AK167465|Zc3hc1|232679|zinc finger, C3HC type 1	NM_172735|Zc3hc1|232679|zinc finger, C3HC type 1
mm9_v1_chr3_-_146278561_146278561	0.0541372	HOX{A4,D4}.p2	AK079224|Dnase2b|56629|deoxyribonuclease II beta	NM_019957|Dnase2b|56629|deoxyribonuclease II beta
mm9_v1_chr3_+_30645214_30645214	0.0539907	HOX{A4,D4}.p2	AK044227|Samd7|75953|sterile alpha motif domain containing 7	NM_029489|Samd7|75953|sterile alpha motif domain containing 7
mm9_v1_chr4_+_102664399_102664426	0.0527415	HOX{A4,D4}.p2	NM_001163768|Tctex1d1|67344|Tctex1 domain containing 1	AK040270|Tctex1d1|67344|Tctex1 domain containing 1
mm9_v1_chr4_-_134409044_134409108	0.0508543	HOX{A4,D4}.p2	AY364165|Tmem57|66146|transmembrane protein 57	BC054355|Tmem57|66146|transmembrane protein 57	BC010714|Tmem57|66146|transmembrane protein 57
mm9_v1_chr17_+_49754460_49754540	0.0495413	HOX{A4,D4}.p2	AK083760|Kif6|319991|kinesin family member 6	NM_177052|Kif6|319991|kinesin family member 6	AK043404|Kif6|319991|kinesin family member 6
mm9_v1_chr3_+_88420105_88420182	0.0489917	HOX{A4,D4}.p2	NM_001198911|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2	AK144972|Arhgef2|16800|rho/rac guanine nucleotide exchange factor (GEF) 2
mm9_v1_chr18_-_47528483_47528523	0.0483507	HOX{A4,D4}.p2	BC059238|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK042751|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	NM_018744|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	AK082711|Sema6a|20358|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm9_v1_chr7_+_14209315_14209343	0.0482482	HOX{A4,D4}.p2	NM_001184980|Sult2a5|434264|sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5
mm9_v1_chr10_+_88194153_88194296	0.0479965	HOX{A4,D4}.p2	AK018138|Arl1|104303|ADP-ribosylation factor-like 1	AK010732|Arl1|104303|ADP-ribosylation factor-like 1	NM_025859|Arl1|104303|ADP-ribosylation factor-like 1	AK167748|Arl1|104303|ADP-ribosylation factor-like 1	BC096684|Arl1|104303|ADP-ribosylation factor-like 1
mm9_v1_chr2_-_48804672_48804789	0.0465668	HOX{A4,D4}.p2	BC019748|Orc4|26428|origin recognition complex, subunit 4	BC015072|Orc4|26428|origin recognition complex, subunit 4	AJ003140|Orc4|26428|origin recognition complex, subunit 4	AK011550|Orc4|26428|origin recognition complex, subunit 4	AK012669|Orc4|26428|origin recognition complex, subunit 4	AK049534|Orc4|26428|origin recognition complex, subunit 4	AK084326|Orc4|26428|origin recognition complex, subunit 4	AK010258|Orc4|26428|origin recognition complex, subunit 4	AK169291|Orc4|26428|origin recognition complex, subunit 4	AK076324|Orc4|26428|origin recognition complex, subunit 4	NM_001177313|Orc4|26428|origin recognition complex, subunit 4	NM_011958|Orc4|26428|origin recognition complex, subunit 4
mm9_v1_chr7_+_107685608_107685745	0.0464964	HOX{A4,D4}.p2	AK161506|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	NM_183270|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK019895|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK088786|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116995|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC116997|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC096605|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	AK008883|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8	BC048574|Chchd8|68185|coiled-coil-helix-coiled-coil-helix domain containing 8
mm9_v1_chr9_+_121643763_121643808	0.0453799	HOX{A4,D4}.p2	AK052484|Nktr|18087|natural killer tumor recognition sequence
mm9_v1_chr19_-_55315725_55315725	0.0452507	HOX{A4,D4}.p2	AY395631|Gucy2g|73707|guanylate cyclase 2g	NM_001081076|Gucy2g|73707|guanylate cyclase 2g
mm9_v1_chr9_+_92204214_92204235	0.0446071	HOX{A4,D4}.p2	AK132905|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	NM_001033184|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene	AK018865|1700057G04Rik|78459|RIKEN cDNA 1700057G04 gene
mm9_v1_chr10_+_21097094_21097135	0.0437619	HOX{A4,D4}.p2	AF510322|Aldh8a1|237320|aldehyde dehydrogenase 8 family, member A1	AK050298|Aldh8a1|237320|aldehyde dehydrogenase 8 family, member A1	AK165447|Aldh8a1|237320|aldehyde dehydrogenase 8 family, member A1	NM_178713|Aldh8a1|237320|aldehyde dehydrogenase 8 family, member A1	AK143752|Aldh8a1|237320|aldehyde dehydrogenase 8 family, member A1
mm9_v1_chr18_-_80443840_80443840	0.0422198	HOX{A4,D4}.p2	AK141935|Hsbp1l1|66255|heat shock factor binding protein 1-like 1	NM_001136181|Hsbp1l1|66255|heat shock factor binding protein 1-like 1
mm9_v1_chr5_-_144266956_144266980	0.0417886	HOX{A4,D4}.p2	
mm9_v1_chr7_+_149684731_149684776	0.0417497	HOX{A4,D4}.p2	L49466|Tnnt3|21957|troponin T3, skeletal, fast	L49467|Tnnt3|21957|troponin T3, skeletal, fast	L49468|Tnnt3|21957|troponin T3, skeletal, fast	L49469|Tnnt3|21957|troponin T3, skeletal, fast	L49470|Tnnt3|21957|troponin T3, skeletal, fast	L49471|Tnnt3|21957|troponin T3, skeletal, fast	L49472|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163664|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163665|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163666|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163667|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163668|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163669|Tnnt3|21957|troponin T3, skeletal, fast	NM_001163670|Tnnt3|21957|troponin T3, skeletal, fast	NM_011620|Tnnt3|21957|troponin T3, skeletal, fast	U77779|Tnnt3|21957|troponin T3, skeletal, fast	BC003747|Tnnt3|21957|troponin T3, skeletal, fast	AK003147|Tnnt3|21957|troponin T3, skeletal, fast
mm9_v1_chr12_+_96930429_96930467	0.0413654	HOX{A4,D4}.p2	AK135149|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	NM_201518|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK136973|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC067058|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	AK041311|Flrt2|399558|fibronectin leucine rich transmembrane protein 2	BC096471|Flrt2|399558|fibronectin leucine rich transmembrane protein 2
mm9_v1_chr7_-_70357361_70357454	0.040533	HOX{A4,D4}.p2	AY574266|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AF225980|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK157809|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	L37663|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	NM_007390|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7	AK034208|Chrna7|11441|cholinergic receptor, nicotinic, alpha polypeptide 7
mm9_v1_chr11_+_104953532_104953539	0.0396998	HOX{A4,D4}.p2	NM_001081046|Efcab3|70894|EF-hand calcium binding domain 3	BC050801|Efcab3|70894|EF-hand calcium binding domain 3	AK014861|Efcab3|70894|EF-hand calcium binding domain 3
mm9_v1_chr14_-_55305438_55305460	0.0394684	HOX{A4,D4}.p2	AK122342|Acin1|56215|apoptotic chromatin condensation inducer 1	AK012337|Acin1|56215|apoptotic chromatin condensation inducer 1	AK050467|Acin1|56215|apoptotic chromatin condensation inducer 1	BC075691|Acin1|56215|apoptotic chromatin condensation inducer 1	AK030449|Acin1|56215|apoptotic chromatin condensation inducer 1
mm9_v1_chr19_-_39815590_39815597	0.0391723	HOX{A4,D4}.p2	NM_001039555|Cyp2c68|433247|cytochrome P450, family 2, subfamily c, polypeptide 68
mm9_v1_chr6_+_127396847_127396857	0.0377182	HOX{A4,D4}.p2	AK151393|Parp11|101187|poly (ADP-ribose) polymerase family, member 11
mm9_v1_chr6_+_57159851_57159851	0.0373183	HOX{A4,D4}.p2	NM_053235|Vmn1r13|113862|vomeronasal 1 receptor 13
mm9_v1_chr6_+_49345602_49345605	0.0368692	HOX{A4,D4}.p2	AF285580|Stk31|77485|serine threonine kinase 31	NM_029916|Stk31|77485|serine threonine kinase 31	BC137989|Stk31|77485|serine threonine kinase 31
mm9_v1_chr17_+_30272123_30272409	0.0361013	HOX{A4,D4}.p2	BC027161|Zfand3|21769|zinc finger, AN1-type domain 3	EF437371|Zfand3|21769|zinc finger, AN1-type domain 3	BC024483|Zfand3|21769|zinc finger, AN1-type domain 3
mm9_v1_chr8_+_119619761_119619897	0.0355866	HOX{A4,D4}.p2	AF294899|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AJ278064|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_001163028|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	NM_021486|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	AK146472|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125328|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC125330|Bcmo1|63857|beta-carotene 15,15'-monooxygenase	BC145036|Bcmo1|63857|beta-carotene 15,15'-monooxygenase
mm9_v1_chr5_-_109012019_109012139	0.035213	HOX{A4,D4}.p2	BC003958|Gak|231580|cyclin G associated kinase
mm9_v1_chr19_+_3388856_3388916	0.0351002	HOX{A4,D4}.p2	AK161511|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AB057423|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	NM_001039657|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	NM_001039658|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	BC024377|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK015732|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK053809|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)	AK015724|Mtl5|17771|metallothionein-like 5, testis-specific (tesmin)
mm9_v1_chr11_-_100131176_100131184	0.0331168	HOX{A4,D4}.p2	BC112371|Krt42|68239|keratin 42	AY459292|Krt42|68239|keratin 42	BC148204|Krt42|68239|keratin 42	NM_212483|Krt42|68239|keratin 42
mm9_v1_chr15_+_35301320_35301357	0.0323659	HOX{A4,D4}.p2	BC158052|Vps13b|666173|vacuolar protein sorting 13B (yeast)
mm9_v1_chr1_+_12682510_12682540	0.0316129	HOX{A4,D4}.p2	NM_001198565|Sulf1|240725|sulfatase 1	NM_001198566|Sulf1|240725|sulfatase 1	AK078756|Sulf1|240725|sulfatase 1
mm9_v1_chr18_+_37649118_37649272	0.0315281	HOX{A4,D4}.p2	AK140341|Pcdhb18|93889|protocadherin beta 18	NM_053143|Pcdhb18|93889|protocadherin beta 18	BC099958|Pcdhb18|93889|protocadherin beta 18	AY013779|Pcdhb18|93889|protocadherin beta 18
mm9_v1_chrX_-_65174607_65174624	0.0304714	HOX{A4,D4}.p2	AK016292|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	BC125317|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	BC138016|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	AK017084|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene	NM_025763|4933436I01Rik|66780|RIKEN cDNA 4933436I01 gene
mm9_v1_chr17_-_95149352_95149379	0.0300238	HOX{A4,D4}.p2	BC099943|Mettl4|76781|methyltransferase like 4
mm9_v1_chr5_+_148081701_148081706	0.0293417	HOX{A4,D4}.p2	AK020261|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103572|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103581|Pdx1|18609|pancreatic and duodenal homeobox 1	BC103582|Pdx1|18609|pancreatic and duodenal homeobox 1	BC105642|Pdx1|18609|pancreatic and duodenal homeobox 1	NM_008814|Pdx1|18609|pancreatic and duodenal homeobox 1
mm9_v1_chr1_+_185858324_185858355	0.0285892	HOX{A4,D4}.p2	BC025066|Dusp10|63953|dual specificity phosphatase 10	AB037908|Dusp10|63953|dual specificity phosphatase 10	AK142568|Dusp10|63953|dual specificity phosphatase 10	AK088186|Dusp10|63953|dual specificity phosphatase 10	NM_022019|Dusp10|63953|dual specificity phosphatase 10	AK035293|Dusp10|63953|dual specificity phosphatase 10	AK050528|Dusp10|63953|dual specificity phosphatase 10	AK088357|Dusp10|63953|dual specificity phosphatase 10	AK088024|Dusp10|63953|dual specificity phosphatase 10	AK011995|Dusp10|63953|dual specificity phosphatase 10
mm9_v1_chrX_-_6618729_6618744	0.0279292	HOX{A4,D4}.p2	AJ555465|Ccnb3|209091|cyclin B3	AJ555464|Ccnb3|209091|cyclin B3	NM_183015|Ccnb3|209091|cyclin B3
mm9_v1_chr4_+_134481298_134481299	0.0263898	HOX{A4,D4}.p2	
mm9_v1_chrX_+_34907916_34907916	0.02475	HOX{A4,D4}.p2	NM_001081669|Rhox2d|434760|reproductive homeobox 2D
mm9_v1_chr1_+_179659944_179659944	0.0238932	HOX{A4,D4}.p2	AK006014|1700016C15Rik|69428|RIKEN cDNA 1700016C15 gene	NM_027077|1700016C15Rik|69428|RIKEN cDNA 1700016C15 gene
mm9_v1_chr8_+_109394141_109394246	0.0237334	HOX{A4,D4}.p2	NM_008217|Has3|15118|hyaluronan synthase 3	U86408|Has3|15118|hyaluronan synthase 3	BC138152|Has3|15118|hyaluronan synthase 3	BC138161|Has3|15118|hyaluronan synthase 3
mm9_v1_chr16_+_10545479_10545491	0.0233135	HOX{A4,D4}.p2	AK122255|Clec16a|74374|C-type lectin domain family 16, member A	NM_177562|Clec16a|74374|C-type lectin domain family 16, member A	AK155314|Clec16a|74374|C-type lectin domain family 16, member A
mm9_v1_chr3_+_90318850_90318869	0.0232485	HOX{A4,D4}.p2	AK002755|S100a13|20196|S100 calcium binding protein A13	AK008895|S100a13|20196|S100 calcium binding protein A13
mm9_v1_chr1_+_159388702_159388722	0.0224968	HOX{A4,D4}.p2	AK151310|BC026585|226527|cDNA sequence BC026585	BC026585|BC026585|226527|cDNA sequence BC026585	AK143913|BC026585|226527|cDNA sequence BC026585	NM_001033284|BC026585|226527|cDNA sequence BC026585
mm9_v1_chr5_-_98904692_98904727	0.0217063	HOX{A4,D4}.p2	
mm9_v1_chr15_-_77787128_77787170	0.0198797	HOX{A4,D4}.p2	NM_001017983|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2	NM_001168260|Foxred2|239554|FAD-dependent oxidoreductase domain containing 2
mm9_v1_chr17_-_45705824_45706064	0.0178942	HOX{A4,D4}.p2	S46109|Hsp90ab1|15516|heat shock protein 90 alpha (cytosolic), class B member 1
mm9_v1_chr15_-_102019373_102019395	0.0178156	HOX{A4,D4}.p2	AY033912|Csad|246277|cysteine sulfinic acid decarboxylase	AK186014|Csad|246277|cysteine sulfinic acid decarboxylase
mm9_v1_chr10_-_33501920_33501920	0.0177018	HOX{A4,D4}.p2	NM_001101452|Gm4794|215895|predicted gene 4794
mm9_v1_chr19_-_36763823_36763968	0.0175988	HOX{A4,D4}.p2	AK142254|1500017E21Rik|668215|RIKEN cDNA 1500017E21 gene
mm9_v1_chr13_+_78337168_78337277	0.0175085	HOX{A4,D4}.p2	AK082108|A830082K12Rik|320174|RIKEN cDNA A830082K12 gene
mm9_v1_chr4_+_129784799_129784867	0.015069	HOX{A4,D4}.p2	AK075978|Pef1|67898|penta-EF hand domain containing 1	NM_026441|Pef1|67898|penta-EF hand domain containing 1	AK007394|Pef1|67898|penta-EF hand domain containing 1	AK013238|Pef1|67898|penta-EF hand domain containing 1	AK046247|Pef1|67898|penta-EF hand domain containing 1	BC019191|Pef1|67898|penta-EF hand domain containing 1
mm9_v1_chr8_-_96496001_96496082	0.0149876	HOX{A4,D4}.p2	AK197102|Amfr|23802|autocrine motility factor receptor
mm9_v1_chr1_-_65119965_65120107	0.0141459	HOX{A4,D4}.p2	M64544|Crygc|12966|crystallin, gamma C	NM_007775|Crygc|12966|crystallin, gamma C	BC056454|Crygc|12966|crystallin, gamma C	EF426301|Crygc|12966|crystallin, gamma C	EF426302|Crygc|12966|crystallin, gamma C	NM_001082573|Crygc|12966|crystallin, gamma C
mm9_v1_chr2_-_120365581_120365597	0.0132138	HOX{A4,D4}.p2	U59739|Zfp106|20402|zinc finger protein 106
mm9_v1_chr17_+_45602736_45602736	0.0124977	HOX{A4,D4}.p2	NM_001111313|Gm9104|668319|predicted gene 9104
mm9_v1_chr10_-_126558207_126558220	0.0120477	HOX{A4,D4}.p2	NM_001171026|Os9|216440|amplified in osteosarcoma	NM_177614|Os9|216440|amplified in osteosarcoma
mm9_v1_chr14_+_32898913_32898957	0.0116271	HOX{A4,D4}.p2	AK139884|Oxnad1|218885|oxidoreductase NAD-binding domain containing 1	NM_145460|Oxnad1|218885|oxidoreductase NAD-binding domain containing 1
mm9_v1_chr19_+_53214934_53215104	0.0116121	HOX{A4,D4}.p2	NM_001164099|Add3|27360|adducin 3 (gamma)	NM_001164101|Add3|27360|adducin 3 (gamma)	AK019491|Add3|27360|adducin 3 (gamma)	AK028481|Add3|27360|adducin 3 (gamma)	AK083939|Add3|27360|adducin 3 (gamma)	BC029196|Add3|27360|adducin 3 (gamma)	AK035151|Add3|27360|adducin 3 (gamma)
mm9_v1_chr15_-_97561769_97561835	0.0095353	HOX{A4,D4}.p2	AK132616|Endou|19011|endonuclease, polyU-specific	NM_001168693|Endou|19011|endonuclease, polyU-specific
mm9_v1_chr11_-_99212407_99212431	0.00854303	HOX{A4,D4}.p2	AB013607|Krt27|16675|keratin 27	NM_010666|Krt27|16675|keratin 27	AK077384|Krt27|16675|keratin 27	BC140996|Krt27|16675|keratin 27	BC140997|Krt27|16675|keratin 27
mm9_v1_chr6_+_140602773_140602776	0.00797875	HOX{A4,D4}.p2	AK050137|Aebp2|11569|AE binding protein 2
mm9_v1_chr2_+_80478960_80478972	0.00740709	HOX{A4,D4}.p2	NM_027091|Nup35|69482|nucleoporin 35	AK089997|Nup35|69482|nucleoporin 35
mm9_v1_chr14_+_106081278_106081354	0.0070623	HOX{A4,D4}.p2	
mm9_v1_chr13_+_106233718_106234065	0.00702075	HOX{A4,D4}.p2	AK140194|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	NM_008308|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049884|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	AK049814|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138669|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A	BC138681|Htr1a|15550|5-hydroxytryptamine (serotonin) receptor 1A
mm9_v1_chr1_+_172207448_172207506	0.00679208	HOX{A4,D4}.p2	BC145540|Sh2d1b1|26904|SH2 domain protein 1B1	BC171965|Sh2d1b1|26904|SH2 domain protein 1B1	AK089191|Sh2d1b1|26904|SH2 domain protein 1B1	BC116698|Sh2d1b1|26904|SH2 domain protein 1B1	BC117508|Sh2d1b1|26904|SH2 domain protein 1B1	NM_012009|Sh2d1b1|26904|SH2 domain protein 1B1	AB196832|Sh2d1b1|26904|SH2 domain protein 1B1	AB196833|Sh2d1b1|26904|SH2 domain protein 1B1	AB196834|Sh2d1b1|26904|SH2 domain protein 1B1	AB196835|Sh2d1b1|26904|SH2 domain protein 1B1	AF020263|Sh2d1b1|26904|SH2 domain protein 1B1	DQ131180|Sh2d1b1|26904|SH2 domain protein 1B1	DQ132507|Sh2d1b1|26904|SH2 domain protein 1B1	DQ132508|Sh2d1b1|26904|SH2 domain protein 1B1	DQ132509|Sh2d1b1|26904|SH2 domain protein 1B1	DQ132510|Sh2d1b1|26904|SH2 domain protein 1B1
mm9_v1_chrX_-_17149313_17149460	0.00643898	HOX{A4,D4}.p2	BC012515|Fundc1|72018|FUN14 domain containing 1	AK168868|Fundc1|72018|FUN14 domain containing 1	BC030487|Fundc1|72018|FUN14 domain containing 1	AK005163|Fundc1|72018|FUN14 domain containing 1	NM_028058|Fundc1|72018|FUN14 domain containing 1
mm9_v1_chr1_+_79772592_79772632	0.00515678	HOX{A4,D4}.p2	NM_001081210|Mrpl44|69163|mitochondrial ribosomal protein L44
mm9_v1_chr2_-_63022140_63022343	0.00414986	HOX{A4,D4}.p2	AJ291608|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK052366|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK043768|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	AK034003|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7	NM_133207|Kcnh7|170738|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm9_v1_chr4_-_134081867_134082196	0.00409188	HOX{A4,D4}.p2	AK196748|Fam54b|76824|family with sequence similarity 54, member B	AK205711|Fam54b|76824|family with sequence similarity 54, member B	AK194688|Fam54b|76824|family with sequence similarity 54, member B
mm9_v1_chr6_-_86347065_86347084	0.00330624	HOX{A4,D4}.p2	AK173058|Pcyox1|66881|prenylcysteine oxidase 1
mm9_v1_chr3_+_90318681_90318681	0.00284565	HOX{A4,D4}.p2	NM_009113|S100a13|20196|S100 calcium binding protein A13
mm9_v1_chr5_+_64203602_64203733	0.0018868	HOX{A4,D4}.p2	AK050792|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	AK002869|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene	NM_029554|0610040J01Rik|76261|RIKEN cDNA 0610040J01 gene
mm9_v1_chr15_+_4677207_4677220	0.00151533	HOX{A4,D4}.p2	NM_016704|C6|12274|complement component 6	AF184900|C6|12274|complement component 6	AK041057|C6|12274|complement component 6	BC011251|C6|12274|complement component 6
mm9_v1_chr10_+_126602394_126602451	0.0014999	HOX{A4,D4}.p2	BC022180|B4galnt1|14421|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm9_v1_chr8_+_113406022_113406076	0.00129008	HOX{A4,D4}.p2	
mm9_v1_chr14_-_51415402_51415402	0.000614779	HOX{A4,D4}.p2	NM_001111119|Ccnb1ip1|239083|cyclin B1 interacting protein 1
mm9_v1_chr11_-_116713532_116713613	3.65232e-05	HOX{A4,D4}.p2	AF250135|Srsf2|20382|serine/arginine-rich splicing factor 2
